Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3139 and GFF3140 overlap by 7 nucleotides GFF3140 and GFF3141 overlap by 4 nucleotides GFF3141 and GFF3142 are separated by 31 nucleotides GFF3142 and GFF3143 are separated by 4 nucleotides GFF3143 and GFF3144 are separated by 3 nucleotides
GFF3139 - Sensory histidine kinase QseC, at 146,589 to 147,938
GFF3139
GFF3140 - hypothetical protein, at 147,932 to 148,048
GFF3140
GFF3141 - Modulator of drug activity B, at 148,045 to 148,626
GFF3141
GFF3142 - FIG00896075: hypothetical protein, at 148,658 to 148,972
GFF3142
GFF3143 - hypothetical protein, at 148,977 to 149,093
GFF3143
GFF3144 - Topoisomerase IV subunit B (EC 5.99.1.-), at 149,097 to 150,989
GFF3144
Position (kb) 148
149 Strain fitness (log2 ratio) -2
-1
0
1
2 at 147.721 kb on + strand, within GFF3139 at 147.721 kb on + strand, within GFF3139 at 147.785 kb on + strand, within GFF3139 at 147.925 kb on + strand at 147.928 kb on + strand at 147.928 kb on + strand at 147.929 kb on - strand at 147.929 kb on - strand at 147.929 kb on - strand at 148.186 kb on + strand, within GFF3141 at 148.288 kb on - strand, within GFF3141 at 148.325 kb on - strand, within GFF3141 at 148.401 kb on + strand, within GFF3141 at 148.470 kb on - strand, within GFF3141 at 148.476 kb on - strand, within GFF3141 at 148.584 kb on + strand at 148.653 kb on + strand at 148.654 kb on - strand at 148.754 kb on - strand, within GFF3142 at 148.898 kb on - strand, within GFF3142 at 148.978 kb on + strand at 149.079 kb on + strand, within GFF3143 at 149.079 kb on + strand, within GFF3143
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 147,721 + GFF3139 0.84 -0.3 147,721 + GFF3139 0.84 -0.2 147,785 + GFF3139 0.89 -0.9 147,925 + -0.1 147,928 + -0.2 147,928 + -0.5 147,929 - +0.3 147,929 - -2.0 147,929 - -1.0 148,186 + GFF3141 0.24 -0.9 148,288 - GFF3141 0.42 +0.2 148,325 - GFF3141 0.48 +0.0 148,401 + GFF3141 0.61 +0.1 148,470 - GFF3141 0.73 -1.0 148,476 - GFF3141 0.74 +1.9 148,584 + +0.2 148,653 + -0.2 148,654 - +0.0 148,754 - GFF3142 0.30 -0.2 148,898 - GFF3142 0.76 -1.1 148,978 + -0.0 149,079 + GFF3143 0.87 -0.1 149,079 + GFF3143 0.87 +0.4
Or see this region's nucleotide sequence