Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3108

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
116,883	+				+0.2
116,884	-				+0.4
116,884	-				+0.7
116,894	+		GFF3107	0.11	-0.4
116,895	-		GFF3107	0.11	-0.4
117,045	-		GFF3107	0.26	-0.2
117,045	-		GFF3107	0.26	+0.2
117,061	+		GFF3107	0.27	+0.2
117,061	+		GFF3107	0.27	+0.5
117,296	+		GFF3107	0.51	+0.9
117,297	-		GFF3107	0.51	-0.6
117,297	-		GFF3107	0.51	+0.1
117,301	-		GFF3107	0.52	-0.3
117,307	+		GFF3107	0.52	+0.1
117,323	+		GFF3107	0.54	-0.6
117,324	-		GFF3107	0.54	-0.1
117,358	+		GFF3107	0.58	-0.3
117,423	-		GFF3107	0.64	-0.1
117,440	+		GFF3107	0.66	-0.4
117,440	+		GFF3107	0.66	-2.0
117,440	+		GFF3107	0.66	-0.3
117,441	-		GFF3107	0.66	-1.3
117,441	-		GFF3107	0.66	-0.6
117,441	-		GFF3107	0.66	+0.3
117,457	+		GFF3107	0.68	+0.2
117,463	+		GFF3107	0.68	+0.7
117,533	-		GFF3107	0.75	-0.3
117,653	-		GFF3107	0.87	-0.4
117,659	+		GFF3107	0.88	-1.3
117,755	+				+0.7
117,780	+				-0.1
117,833	+				+0.6
117,833	+				-0.1
117,922	+		GFF3108	0.13	-0.2
118,001	-		GFF3108	0.20	+0.0
118,074	-		GFF3108	0.26	+0.4
118,078	+		GFF3108	0.27	-0.1
118,079	-		GFF3108	0.27	+0.1
118,276	-		GFF3108	0.44	-1.0
118,286	-		GFF3108	0.45	-0.2
118,512	+		GFF3108	0.66	-0.3
118,513	-		GFF3108	0.66	-0.4
118,588	+		GFF3108	0.72	+0.6
118,588	+		GFF3108	0.72	+0.3
118,641	+		GFF3108	0.77	-0.1
118,882	+				-0.2
118,885	+				-0.3
118,886	-				-0.4
118,900	+				-0.8
118,903	-				-0.6
118,906	+				+0.1
118,906	+				+0.0
119,054	-		GFF3109	0.80	-0.8
119,054	-		GFF3109	0.80	+1.2
119,061	+		GFF3109	0.84	+0.3
119,071	+		GFF3109	0.89	-0.3
119,071	+		GFF3109	0.89	+0.8
119,219	-		GFF3110	0.46	+0.7
119,248	+		GFF3110	0.56	+0.1
119,249	-		GFF3110	0.56	-0.1
119,249	-		GFF3110	0.56	-0.0
119,281	+		GFF3110	0.67	+0.2
119,282	-		GFF3110	0.68	-0.0
119,320	-		GFF3110	0.81	-0.3
119,320	-		GFF3110	0.81	+0.1
119,320	-		GFF3110	0.81	-0.3
119,320	-		GFF3110	0.81	-0.0
119,415	+				+0.6
119,419	+				-0.4
119,439	-				-0.2
119,482	+				+0.3
119,483	-				-0.8
119,750	-		GFF3111	0.18	-0.6