Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3084

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3081 and GFF3082 overlap by 8 nucleotidesGFF3082 and GFF3083 are separated by 72 nucleotidesGFF3083 and GFF3084 are separated by 14 nucleotidesGFF3084 and GFF3085 are separated by 161 nucleotides GFF3081 - Unknown, probable amino acid transporter, at 90,547 to 92,046 GFF3081 GFF3082 - hypothetical protein, at 92,039 to 92,182 GFF3082 GFF3083 - FIG074102: hypothetical protein, at 92,255 to 92,629 GFF3083 GFF3084 - FIG00553873: hypothetical protein, at 92,644 to 93,945 GFF3084 GFF3085 - Aldehyde dehydrogenase (EC 1.2.1.3), at 94,107 to 95,591 GFF3085 Position (kb) 92 93 94Strain fitness (log2 ratio) -1 0 1at 91.800 kb on + strand, within GFF3081at 91.831 kb on - strand, within GFF3081at 91.878 kb on + strand, within GFF3081at 91.878 kb on + strand, within GFF3081at 91.891 kb on + strand, within GFF3081at 92.041 kb on - strandat 92.076 kb on + strand, within GFF3082at 92.101 kb on + strand, within GFF3082at 92.101 kb on + strand, within GFF3082at 92.101 kb on + strand, within GFF3082at 92.102 kb on - strand, within GFF3082at 92.105 kb on + strand, within GFF3082at 92.120 kb on - strand, within GFF3082at 92.123 kb on + strand, within GFF3082at 92.123 kb on + strand, within GFF3082at 92.124 kb on - strand, within GFF3082at 92.124 kb on - strand, within GFF3082at 92.124 kb on - strand, within GFF3082at 92.210 kb on - strandat 92.492 kb on - strand, within GFF3083at 92.495 kb on + strand, within GFF3083at 92.495 kb on + strand, within GFF3083at 92.495 kb on + strand, within GFF3083at 92.496 kb on - strand, within GFF3083at 92.630 kb on + strandat 92.630 kb on + strandat 92.630 kb on + strandat 92.631 kb on - strandat 92.707 kb on + strandat 92.708 kb on - strandat 92.786 kb on - strand, within GFF3084at 92.810 kb on - strand, within GFF3084at 92.960 kb on + strand, within GFF3084at 93.015 kb on + strand, within GFF3084at 93.160 kb on - strand, within GFF3084at 93.259 kb on + strand, within GFF3084at 93.600 kb on + strand, within GFF3084at 93.673 kb on + strand, within GFF3084at 93.673 kb on + strand, within GFF3084at 93.674 kb on - strand, within GFF3084at 93.706 kb on + strand, within GFF3084at 93.707 kb on - strand, within GFF3084at 93.783 kb on + strand, within GFF3084at 93.918 kb on - strandat 93.981 kb on + strandat 94.060 kb on + strandat 94.060 kb on + strandat 94.061 kb on - strandat 94.080 kb on + strandat 94.123 kb on + strandat 94.169 kb on + strandat 94.368 kb on - strand, within GFF3085at 94.368 kb on - strand, within GFF3085at 94.431 kb on - strand, within GFF3085at 94.622 kb on + strand, within GFF3085at 94.622 kb on + strand, within GFF3085at 94.623 kb on - strand, within GFF3085at 94.657 kb on + strand, within GFF3085at 94.680 kb on - strand, within GFF3085at 94.692 kb on + strand, within GFF3085at 94.692 kb on + strand, within GFF3085at 94.693 kb on - strand, within GFF3085at 94.693 kb on - strand, within GFF3085at 94.694 kb on + strand, within GFF3085at 94.695 kb on - strand, within GFF3085at 94.769 kb on - strand, within GFF3085at 94.909 kb on + strand, within GFF3085at 94.910 kb on - strand, within GFF3085

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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91,800 + GFF3081 0.84 -0.4
91,831 - GFF3081 0.86 -0.7
91,878 + GFF3081 0.89 -0.2
91,878 + GFF3081 0.89 -0.8
91,891 + GFF3081 0.90 +0.0
92,041 - -0.1
92,076 + GFF3082 0.26 +0.1
92,101 + GFF3082 0.43 +0.3
92,101 + GFF3082 0.43 -0.3
92,101 + GFF3082 0.43 -1.3
92,102 - GFF3082 0.44 +0.0
92,105 + GFF3082 0.46 +0.2
92,120 - GFF3082 0.56 -0.6
92,123 + GFF3082 0.58 +0.0
92,123 + GFF3082 0.58 +0.3
92,124 - GFF3082 0.59 +0.2
92,124 - GFF3082 0.59 -0.1
92,124 - GFF3082 0.59 -1.0
92,210 - +0.6
92,492 - GFF3083 0.63 +0.5
92,495 + GFF3083 0.64 +1.1
92,495 + GFF3083 0.64 -0.2
92,495 + GFF3083 0.64 +0.9
92,496 - GFF3083 0.64 +1.1
92,630 + -0.1
92,630 + +0.0
92,630 + -0.6
92,631 - +0.3
92,707 + +0.1
92,708 - -0.2
92,786 - GFF3084 0.11 +0.7
92,810 - GFF3084 0.13 +0.1
92,960 + GFF3084 0.24 +0.2
93,015 + GFF3084 0.28 +0.6
93,160 - GFF3084 0.40 -0.2
93,259 + GFF3084 0.47 -0.3
93,600 + GFF3084 0.73 +0.7
93,673 + GFF3084 0.79 -0.1
93,673 + GFF3084 0.79 +0.1
93,674 - GFF3084 0.79 +0.2
93,706 + GFF3084 0.82 -1.7
93,707 - GFF3084 0.82 -0.0
93,783 + GFF3084 0.87 +0.8
93,918 - +0.2
93,981 + +0.0
94,060 + +0.5
94,060 + -0.4
94,061 - +0.3
94,080 + -0.4
94,123 + +0.1
94,169 + -0.1
94,368 - GFF3085 0.18 +0.1
94,368 - GFF3085 0.18 +0.3
94,431 - GFF3085 0.22 +0.7
94,622 + GFF3085 0.35 +0.2
94,622 + GFF3085 0.35 +0.2
94,623 - GFF3085 0.35 -0.2
94,657 + GFF3085 0.37 +0.1
94,680 - GFF3085 0.39 -0.5
94,692 + GFF3085 0.39 -0.1
94,692 + GFF3085 0.39 -0.8
94,693 - GFF3085 0.39 -0.3
94,693 - GFF3085 0.39 +1.1
94,694 + GFF3085 0.40 -0.5
94,695 - GFF3085 0.40 +0.5
94,769 - GFF3085 0.45 -0.3
94,909 + GFF3085 0.54 -0.2
94,910 - GFF3085 0.54 +1.0

Or see this region's nucleotide sequence