Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3063 and GFF3064 overlap by 1 nucleotides GFF3064 and GFF3065 are separated by 106 nucleotides GFF3065 and GFF3066 are separated by 27 nucleotides GFF3066 and GFF3067 are separated by 112 nucleotides
GFF3063 - FIG002060: uncharacterized protein YggL, at 72,620 to 72,946
GFF3063
GFF3064 - tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33), at 72,946 to 73,713
GFF3064
GFF3065 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 73,820 to 74,872
GFF3065
GFF3066 - FIG001341: Probable Fe(2+)-trafficking protein YggX, at 74,900 to 75,175
GFF3066
GFF3067 - Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-), at 75,288 to 76,373
GFF3067
Position (kb) 73
74
75 Strain fitness (log2 ratio) -1
0
1 at 72.851 kb on - strand, within GFF3063 at 72.948 kb on - strand at 72.967 kb on + strand at 73.046 kb on + strand, within GFF3064 at 73.047 kb on - strand, within GFF3064 at 73.047 kb on - strand, within GFF3064 at 73.047 kb on - strand, within GFF3064 at 73.084 kb on - strand, within GFF3064 at 73.213 kb on - strand, within GFF3064 at 73.224 kb on + strand, within GFF3064 at 73.284 kb on + strand, within GFF3064 at 73.285 kb on - strand, within GFF3064 at 73.602 kb on + strand, within GFF3064 at 73.717 kb on + strand at 74.212 kb on + strand, within GFF3065 at 74.305 kb on + strand, within GFF3065 at 74.359 kb on + strand, within GFF3065 at 74.359 kb on + strand, within GFF3065 at 74.532 kb on + strand, within GFF3065 at 74.540 kb on - strand, within GFF3065 at 74.594 kb on + strand, within GFF3065 at 74.594 kb on + strand, within GFF3065 at 74.595 kb on - strand, within GFF3065 at 74.728 kb on + strand, within GFF3065 at 74.841 kb on + strand at 74.850 kb on + strand at 74.899 kb on + strand at 74.900 kb on - strand at 74.990 kb on + strand, within GFF3066 at 74.991 kb on - strand, within GFF3066 at 75.032 kb on - strand, within GFF3066 at 75.143 kb on - strand, within GFF3066 at 75.217 kb on + strand at 75.453 kb on + strand, within GFF3067 at 75.455 kb on + strand, within GFF3067 at 75.496 kb on - strand, within GFF3067 at 75.496 kb on - strand, within GFF3067 at 75.600 kb on - strand, within GFF3067 at 75.605 kb on + strand, within GFF3067 at 75.606 kb on - strand, within GFF3067 at 75.693 kb on + strand, within GFF3067 at 75.809 kb on + strand, within GFF3067 at 75.852 kb on - strand, within GFF3067 at 75.867 kb on + strand, within GFF3067 at 75.868 kb on - strand, within GFF3067
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 72,851 - GFF3063 0.71 -0.3 72,948 - +0.0 72,967 + -0.1 73,046 + GFF3064 0.13 -0.0 73,047 - GFF3064 0.13 +0.3 73,047 - GFF3064 0.13 -0.0 73,047 - GFF3064 0.13 -0.1 73,084 - GFF3064 0.18 -0.1 73,213 - GFF3064 0.35 +0.2 73,224 + GFF3064 0.36 +0.1 73,284 + GFF3064 0.44 +0.1 73,285 - GFF3064 0.44 -1.3 73,602 + GFF3064 0.85 -0.1 73,717 + +0.1 74,212 + GFF3065 0.37 -0.0 74,305 + GFF3065 0.46 +0.6 74,359 + GFF3065 0.51 -0.1 74,359 + GFF3065 0.51 +0.4 74,532 + GFF3065 0.68 +0.9 74,540 - GFF3065 0.68 +0.5 74,594 + GFF3065 0.74 -0.1 74,594 + GFF3065 0.74 +0.3 74,595 - GFF3065 0.74 +1.0 74,728 + GFF3065 0.86 -0.7 74,841 + -0.5 74,850 + -1.0 74,899 + +0.8 74,900 - -0.2 74,990 + GFF3066 0.33 -0.3 74,991 - GFF3066 0.33 -0.1 75,032 - GFF3066 0.48 +0.7 75,143 - GFF3066 0.88 -0.4 75,217 + +0.5 75,453 + GFF3067 0.15 -0.2 75,455 + GFF3067 0.15 -0.5 75,496 - GFF3067 0.19 +0.3 75,496 - GFF3067 0.19 +0.2 75,600 - GFF3067 0.29 -0.2 75,605 + GFF3067 0.29 +1.3 75,606 - GFF3067 0.29 -0.1 75,693 + GFF3067 0.37 -0.2 75,809 + GFF3067 0.48 +0.1 75,852 - GFF3067 0.52 -0.1 75,867 + GFF3067 0.53 -1.5 75,868 - GFF3067 0.53 -0.0
Or see this region's nucleotide sequence