Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3060

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3059 and GFF3060 are separated by 132 nucleotidesGFF3060 and GFF3061 are separated by 18 nucleotidesGFF3061 and GFF3062 are separated by 17 nucleotidesGFF3062 and GFF3063 are separated by 49 nucleotides GFF3059 - Putative alpha helix chain, at 69,476 to 70,483 GFF3059 GFF3060 - L-asparaginase (EC 3.5.1.1), at 70,616 to 71,662 GFF3060 GFF3061 - hypothetical protein, at 71,681 to 71,833 GFF3061 GFF3062 - FIG004016: Uncharacterized protein YggN, at 71,851 to 72,570 GFF3062 GFF3063 - FIG002060: uncharacterized protein YggL, at 72,620 to 72,946 GFF3063 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1 2at 69.680 kb on + strand, within GFF3059at 69.702 kb on - strand, within GFF3059at 69.771 kb on - strand, within GFF3059at 69.810 kb on + strand, within GFF3059at 69.820 kb on + strand, within GFF3059at 69.820 kb on + strand, within GFF3059at 69.834 kb on - strand, within GFF3059at 69.838 kb on - strand, within GFF3059at 70.039 kb on + strand, within GFF3059at 70.039 kb on + strand, within GFF3059at 70.069 kb on + strand, within GFF3059at 70.069 kb on + strand, within GFF3059at 70.070 kb on - strand, within GFF3059at 70.124 kb on + strand, within GFF3059at 70.125 kb on - strand, within GFF3059at 70.134 kb on + strand, within GFF3059at 70.134 kb on + strand, within GFF3059at 70.134 kb on + strand, within GFF3059at 70.134 kb on + strand, within GFF3059at 70.134 kb on + strand, within GFF3059at 70.134 kb on + strand, within GFF3059at 70.230 kb on + strand, within GFF3059at 70.231 kb on - strand, within GFF3059at 70.261 kb on - strand, within GFF3059at 70.261 kb on - strand, within GFF3059at 70.261 kb on - strand, within GFF3059at 70.261 kb on - strand, within GFF3059at 70.264 kb on + strand, within GFF3059at 70.358 kb on + strand, within GFF3059at 70.369 kb on - strand, within GFF3059at 70.376 kb on - strand, within GFF3059at 70.376 kb on - strand, within GFF3059at 70.430 kb on - strandat 70.938 kb on + strand, within GFF3060at 70.942 kb on + strand, within GFF3060at 70.944 kb on + strand, within GFF3060at 70.945 kb on - strand, within GFF3060at 71.006 kb on - strand, within GFF3060at 71.023 kb on + strand, within GFF3060at 71.023 kb on + strand, within GFF3060at 71.023 kb on + strand, within GFF3060at 71.053 kb on + strand, within GFF3060at 71.055 kb on + strand, within GFF3060at 71.084 kb on - strand, within GFF3060at 71.084 kb on - strand, within GFF3060at 71.199 kb on - strand, within GFF3060at 71.206 kb on + strand, within GFF3060at 71.207 kb on - strand, within GFF3060at 71.208 kb on + strand, within GFF3060at 71.513 kb on - strand, within GFF3060at 71.522 kb on - strand, within GFF3060at 71.523 kb on + strand, within GFF3060at 71.637 kb on - strandat 71.665 kb on + strandat 71.665 kb on + strandat 71.667 kb on + strandat 71.891 kb on - strandat 71.986 kb on + strand, within GFF3062at 72.132 kb on + strand, within GFF3062at 72.135 kb on - strand, within GFF3062at 72.249 kb on + strand, within GFF3062at 72.506 kb on + strandat 72.539 kb on - strandat 72.571 kb on - strandat 72.571 kb on - strandat 72.618 kb on + strandat 72.618 kb on + strandat 72.619 kb on - strandat 72.619 kb on - strandat 72.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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69,680 + GFF3059 0.20 +0.2
69,702 - GFF3059 0.22 +0.6
69,771 - GFF3059 0.29 +0.6
69,810 + GFF3059 0.33 +0.3
69,820 + GFF3059 0.34 +0.4
69,820 + GFF3059 0.34 -0.2
69,834 - GFF3059 0.36 -0.3
69,838 - GFF3059 0.36 -0.2
70,039 + GFF3059 0.56 +0.1
70,039 + GFF3059 0.56 -0.3
70,069 + GFF3059 0.59 +0.6
70,069 + GFF3059 0.59 -0.4
70,070 - GFF3059 0.59 +0.3
70,124 + GFF3059 0.64 +0.3
70,125 - GFF3059 0.64 -0.0
70,134 + GFF3059 0.65 +1.8
70,134 + GFF3059 0.65 +0.1
70,134 + GFF3059 0.65 -0.2
70,134 + GFF3059 0.65 +0.1
70,134 + GFF3059 0.65 -0.1
70,134 + GFF3059 0.65 -0.2
70,230 + GFF3059 0.75 +0.0
70,231 - GFF3059 0.75 +0.1
70,261 - GFF3059 0.78 +0.0
70,261 - GFF3059 0.78 -0.1
70,261 - GFF3059 0.78 -0.4
70,261 - GFF3059 0.78 +0.4
70,264 + GFF3059 0.78 +0.5
70,358 + GFF3059 0.88 +1.0
70,369 - GFF3059 0.89 -0.4
70,376 - GFF3059 0.89 +0.1
70,376 - GFF3059 0.89 +0.0
70,430 - -0.1
70,938 + GFF3060 0.31 -0.1
70,942 + GFF3060 0.31 +0.7
70,944 + GFF3060 0.31 +0.7
70,945 - GFF3060 0.31 +0.5
71,006 - GFF3060 0.37 +0.6
71,023 + GFF3060 0.39 +0.3
71,023 + GFF3060 0.39 +0.1
71,023 + GFF3060 0.39 +0.6
71,053 + GFF3060 0.42 +0.2
71,055 + GFF3060 0.42 +0.2
71,084 - GFF3060 0.45 -0.1
71,084 - GFF3060 0.45 +0.1
71,199 - GFF3060 0.56 -0.0
71,206 + GFF3060 0.56 +0.2
71,207 - GFF3060 0.56 -0.4
71,208 + GFF3060 0.57 -0.1
71,513 - GFF3060 0.86 +0.1
71,522 - GFF3060 0.87 +0.1
71,523 + GFF3060 0.87 -0.2
71,637 - -0.1
71,665 + +0.1
71,665 + +0.3
71,667 + +0.2
71,891 - -0.1
71,986 + GFF3062 0.19 -1.8
72,132 + GFF3062 0.39 -0.2
72,135 - GFF3062 0.39 +0.1
72,249 + GFF3062 0.55 -0.3
72,506 + +0.8
72,539 - +0.7
72,571 - -0.1
72,571 - +0.4
72,618 + -0.8
72,618 + +0.6
72,619 - +0.3
72,619 - +0.1
72,622 - +0.1

Or see this region's nucleotide sequence