Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3049 and GFF3050 are separated by 215 nucleotides GFF3050 and GFF3051 overlap by 1 nucleotides GFF3051 and GFF3052 are separated by 46 nucleotides
GFF3049 - Glutathione synthetase (EC 6.3.2.3), at 62,074 to 63,021
GFF3049
GFF3050 - UPF0301 protein YqgE, at 63,237 to 63,800
GFF3050
GFF3051 - Putative Holliday junction resolvase YggF, at 63,800 to 64,216
GFF3051
GFF3052 - Transcriptional regulator, IclR family, at 64,263 to 64,949
GFF3052
Position (kb) 63
64 Strain fitness (log2 ratio) -2
-1
0
1 at 62.298 kb on + strand, within GFF3049 at 62.359 kb on - strand, within GFF3049 at 62.372 kb on - strand, within GFF3049 at 62.372 kb on - strand, within GFF3049 at 62.503 kb on - strand, within GFF3049 at 62.607 kb on + strand, within GFF3049 at 62.612 kb on + strand, within GFF3049 at 62.613 kb on - strand, within GFF3049 at 63.066 kb on - strand at 63.117 kb on + strand at 63.158 kb on + strand at 63.160 kb on + strand at 63.161 kb on - strand at 63.161 kb on - strand at 63.190 kb on + strand at 63.311 kb on + strand, within GFF3050 at 63.624 kb on + strand, within GFF3050 at 64.214 kb on + strand at 64.215 kb on - strand at 64.302 kb on + strand at 64.388 kb on + strand, within GFF3052 at 64.419 kb on + strand, within GFF3052 at 64.602 kb on - strand, within GFF3052 at 64.610 kb on - strand, within GFF3052 at 64.613 kb on + strand, within GFF3052 at 64.613 kb on + strand, within GFF3052 at 64.615 kb on + strand, within GFF3052 at 64.616 kb on - strand, within GFF3052 at 64.619 kb on + strand, within GFF3052 at 64.620 kb on - strand, within GFF3052 at 64.636 kb on - strand, within GFF3052 at 64.636 kb on - strand, within GFF3052 at 64.644 kb on + strand, within GFF3052 at 64.763 kb on - strand, within GFF3052
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 62,298 + GFF3049 0.24 +0.6 62,359 - GFF3049 0.30 +0.5 62,372 - GFF3049 0.31 +0.8 62,372 - GFF3049 0.31 -0.7 62,503 - GFF3049 0.45 -0.1 62,607 + GFF3049 0.56 -0.2 62,612 + GFF3049 0.57 -0.2 62,613 - GFF3049 0.57 -0.1 63,066 - -0.3 63,117 + -0.4 63,158 + +0.3 63,160 + -0.0 63,161 - -2.1 63,161 - +0.1 63,190 + -0.6 63,311 + GFF3050 0.13 +0.0 63,624 + GFF3050 0.69 -1.2 64,214 + -0.1 64,215 - +0.3 64,302 + +0.6 64,388 + GFF3052 0.18 +0.4 64,419 + GFF3052 0.23 -0.1 64,602 - GFF3052 0.49 +0.1 64,610 - GFF3052 0.51 +0.2 64,613 + GFF3052 0.51 +0.4 64,613 + GFF3052 0.51 +0.3 64,615 + GFF3052 0.51 +0.4 64,616 - GFF3052 0.51 +0.3 64,619 + GFF3052 0.52 +0.4 64,620 - GFF3052 0.52 +0.4 64,636 - GFF3052 0.54 +0.8 64,636 - GFF3052 0.54 +0.6 64,644 + GFF3052 0.55 -0.8 64,763 - GFF3052 0.73 +0.3
Or see this region's nucleotide sequence