Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF303 and GFF304 are separated by 74 nucleotides GFF304 and GFF305 overlap by 1 nucleotides
GFF303 - Putative uncharacterized protein STY3991, at 20,846 to 21,859
GFF303
GFF304 - Transcriptional regulatory protein UhpA, at 21,934 to 22,524
GFF304
GFF305 - Sensor histidine protein kinase UhpB, glucose-6-phosphate specific (EC 2.7.13.3), at 22,524 to 24,026
GFF305
Position (kb)
21
22
23 Strain fitness (log2 ratio)
-2
-1
0
1 at 21.104 kb on + strand, within GFF303 at 21.104 kb on + strand, within GFF303 at 21.105 kb on - strand, within GFF303 at 21.163 kb on + strand, within GFF303 at 21.163 kb on + strand, within GFF303 at 21.261 kb on - strand, within GFF303 at 21.261 kb on - strand, within GFF303 at 21.314 kb on - strand, within GFF303 at 21.383 kb on + strand, within GFF303 at 21.383 kb on + strand, within GFF303 at 21.384 kb on - strand, within GFF303 at 21.384 kb on - strand, within GFF303 at 21.401 kb on + strand, within GFF303 at 21.401 kb on + strand, within GFF303 at 21.401 kb on + strand, within GFF303 at 21.402 kb on - strand, within GFF303 at 21.402 kb on - strand, within GFF303 at 21.407 kb on + strand, within GFF303 at 21.407 kb on + strand, within GFF303 at 21.611 kb on + strand, within GFF303 at 21.714 kb on - strand, within GFF303 at 21.714 kb on - strand, within GFF303 at 21.899 kb on + strand at 22.077 kb on - strand, within GFF304 at 22.082 kb on + strand, within GFF304 at 22.082 kb on + strand, within GFF304 at 22.082 kb on + strand, within GFF304 at 22.082 kb on + strand, within GFF304 at 22.083 kb on - strand, within GFF304 at 22.096 kb on - strand, within GFF304 at 22.110 kb on + strand, within GFF304 at 22.233 kb on + strand, within GFF304 at 22.273 kb on - strand, within GFF304 at 22.273 kb on - strand, within GFF304 at 22.294 kb on + strand, within GFF304 at 22.295 kb on - strand, within GFF304 at 22.397 kb on + strand, within GFF304 at 22.522 kb on + strand at 22.523 kb on - strand at 22.676 kb on + strand, within GFF305 at 22.677 kb on - strand, within GFF305 at 22.737 kb on + strand, within GFF305 at 22.858 kb on + strand, within GFF305 at 23.005 kb on - strand, within GFF305 at 23.019 kb on - strand, within GFF305 at 23.153 kb on + strand, within GFF305
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 21,104 + GFF303 0.25 +0.1 21,104 + GFF303 0.25 -0.0 21,105 - GFF303 0.26 -2.3 21,163 + GFF303 0.31 -0.2 21,163 + GFF303 0.31 +0.2 21,261 - GFF303 0.41 -0.2 21,261 - GFF303 0.41 +0.2 21,314 - GFF303 0.46 -0.3 21,383 + GFF303 0.53 +0.7 21,383 + GFF303 0.53 -0.1 21,384 - GFF303 0.53 -0.6 21,384 - GFF303 0.53 -0.1 21,401 + GFF303 0.55 -0.3 21,401 + GFF303 0.55 +0.8 21,401 + GFF303 0.55 -0.1 21,402 - GFF303 0.55 +0.3 21,402 - GFF303 0.55 -0.2 21,407 + GFF303 0.55 -0.5 21,407 + GFF303 0.55 -0.2 21,611 + GFF303 0.75 +0.1 21,714 - GFF303 0.86 +0.1 21,714 - GFF303 0.86 +0.0 21,899 + +0.2 22,077 - GFF304 0.24 -0.2 22,082 + GFF304 0.25 +0.4 22,082 + GFF304 0.25 -0.8 22,082 + GFF304 0.25 -0.0 22,082 + GFF304 0.25 +0.1 22,083 - GFF304 0.25 +0.3 22,096 - GFF304 0.27 -0.4 22,110 + GFF304 0.30 -0.0 22,233 + GFF304 0.51 -0.2 22,273 - GFF304 0.57 -0.6 22,273 - GFF304 0.57 -0.9 22,294 + GFF304 0.61 +0.3 22,295 - GFF304 0.61 +0.1 22,397 + GFF304 0.78 -0.2 22,522 + +0.2 22,523 - +0.8 22,676 + GFF305 0.10 +0.9 22,677 - GFF305 0.10 +0.7 22,737 + GFF305 0.14 +0.5 22,858 + GFF305 0.22 -0.0 23,005 - GFF305 0.32 +0.8 23,019 - GFF305 0.33 -0.6 23,153 + GFF305 0.42 +0.0
Or see this region's nucleotide sequence