Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3033

Experiment: C.elegans, mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3031 and GFF3032 are separated by 279 nucleotidesGFF3032 and GFF3033 are separated by 38 nucleotidesGFF3033 and GFF3034 are separated by 13 nucleotides GFF3031 - FIG01048344: hypothetical protein, at 45,778 to 46,668 GFF3031 GFF3032 - Putative mannitol dehydrogenase, at 46,948 to 47,421 GFF3032 GFF3033 - Malate dehydrogenase (EC 1.1.1.37), at 47,460 to 48,467 GFF3033 GFF3034 - Sorbitol dehydrogenase (EC 1.1.1.14), at 48,481 to 49,497 GFF3034 Position (kb) 47 48 49Strain fitness (log2 ratio) -1 0 1at 47.022 kb on + strand, within GFF3032at 47.078 kb on - strand, within GFF3032at 47.149 kb on + strand, within GFF3032at 47.421 kb on + strandat 47.583 kb on + strand, within GFF3033at 47.593 kb on - strand, within GFF3033at 47.704 kb on + strand, within GFF3033at 47.717 kb on + strand, within GFF3033at 47.717 kb on + strand, within GFF3033at 47.840 kb on + strand, within GFF3033at 47.840 kb on + strand, within GFF3033at 47.841 kb on - strand, within GFF3033at 47.841 kb on - strand, within GFF3033at 47.874 kb on + strand, within GFF3033at 48.036 kb on - strand, within GFF3033at 48.119 kb on + strand, within GFF3033at 48.164 kb on + strand, within GFF3033at 48.304 kb on + strand, within GFF3033at 48.348 kb on - strand, within GFF3033at 48.420 kb on - strandat 48.468 kb on - strandat 48.468 kb on - strandat 48.468 kb on - strandat 48.591 kb on + strand, within GFF3034at 48.662 kb on - strand, within GFF3034at 48.783 kb on + strand, within GFF3034at 48.850 kb on - strand, within GFF3034at 48.925 kb on - strand, within GFF3034at 49.172 kb on + strand, within GFF3034at 49.173 kb on - strand, within GFF3034at 49.239 kb on + strand, within GFF3034at 49.240 kb on - strand, within GFF3034at 49.254 kb on + strand, within GFF3034at 49.255 kb on - strand, within GFF3034at 49.256 kb on + strand, within GFF3034at 49.290 kb on + strand, within GFF3034at 49.418 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
remove
47,022 + GFF3032 0.16 -0.1
47,078 - GFF3032 0.27 -0.0
47,149 + GFF3032 0.42 +0.5
47,421 + -0.4
47,583 + GFF3033 0.12 -0.1
47,593 - GFF3033 0.13 -0.5
47,704 + GFF3033 0.24 +0.2
47,717 + GFF3033 0.25 +0.1
47,717 + GFF3033 0.25 -0.4
47,840 + GFF3033 0.38 -0.8
47,840 + GFF3033 0.38 -0.8
47,841 - GFF3033 0.38 -0.6
47,841 - GFF3033 0.38 +0.3
47,874 + GFF3033 0.41 +0.1
48,036 - GFF3033 0.57 +0.1
48,119 + GFF3033 0.65 -0.9
48,164 + GFF3033 0.70 -0.1
48,304 + GFF3033 0.84 -0.1
48,348 - GFF3033 0.88 +0.9
48,420 - -0.2
48,468 - +0.2
48,468 - +0.2
48,468 - -0.2
48,591 + GFF3034 0.11 -0.1
48,662 - GFF3034 0.18 -0.3
48,783 + GFF3034 0.30 +0.5
48,850 - GFF3034 0.36 +0.3
48,925 - GFF3034 0.44 -1.5
49,172 + GFF3034 0.68 +0.1
49,173 - GFF3034 0.68 -0.9
49,239 + GFF3034 0.75 -0.3
49,240 - GFF3034 0.75 +0.3
49,254 + GFF3034 0.76 +0.8
49,255 - GFF3034 0.76 -0.3
49,256 + GFF3034 0.76 +0.3
49,290 + GFF3034 0.80 -1.0
49,418 - +0.1

Or see this region's nucleotide sequence