Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3000

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
14,944	+		GFF2999	0.35	-0.3
14,945	-		GFF2999	0.35	-1.9
14,945	-		GFF2999	0.35	-0.3
14,955	-		GFF2999	0.36	-0.8
15,035	+		GFF2999	0.41	+0.1
15,068	+		GFF2999	0.44	+0.3
15,069	-		GFF2999	0.44	-0.4
15,078	+		GFF2999	0.44	-0.2
15,078	+		GFF2999	0.44	-0.2
15,154	+		GFF2999	0.50	-0.1
15,154	+		GFF2999	0.50	+0.6
15,154	+		GFF2999	0.50	-0.4
15,154	+		GFF2999	0.50	+0.4
15,177	-		GFF2999	0.51	-0.3
15,190	+		GFF2999	0.52	-0.9
15,245	-		GFF2999	0.56	+0.6
15,278	+		GFF2999	0.58	-0.6
15,365	+		GFF2999	0.64	+0.3
15,383	+		GFF2999	0.66	-0.5
15,462	-		GFF2999	0.71	-0.0
15,466	+		GFF2999	0.71	+0.2
15,531	-		GFF2999	0.76	+0.9
15,540	-		GFF2999	0.77	-0.0
15,556	+		GFF2999	0.78	+1.5
15,592	-		GFF2999	0.80	-0.5
15,746	+				-0.7
15,771	-				-0.6
15,771	-				-0.2
15,771	-				-0.2
15,873	-				-0.2
15,938	-				-0.0
16,050	+		GFF3000	0.17	-0.1
16,095	+		GFF3000	0.24	+0.0
16,095	+		GFF3000	0.24	-0.7
16,096	-		GFF3000	0.24	+0.3
16,110	+		GFF3000	0.26	-1.2
16,137	+		GFF3000	0.29	+0.3
16,189	-		GFF3000	0.36	-0.5
16,345	-		GFF3000	0.58	+0.5
16,362	+		GFF3000	0.60	+0.1
16,384	+		GFF3000	0.63	-0.7
16,402	+		GFF3000	0.65	+0.0
16,522	-		GFF3000	0.82	-0.2
16,523	+		GFF3000	0.82	-0.8
17,267	+				+0.6
17,272	+				+0.5
17,357	-				-0.3
17,552	+				-0.1
17,553	-				-0.0