Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF298 and GFF299 are separated by 3 nucleotides GFF299 and GFF300 are separated by 1 nucleotides GFF300 and GFF301 are separated by 324 nucleotides
GFF298 - Acetolactate synthase large subunit (EC 2.2.1.6), at 15,473 to 17,161
GFF298
GFF299 - Acetolactate synthase small subunit (EC 2.2.1.6), at 17,165 to 17,455
GFF299
GFF300 - Deoxyribose operon repressor, DeoR family, at 17,457 to 18,242
GFF300
GFF301 - Ribokinase (EC 2.7.1.15), at 18,567 to 19,487
GFF301
Position (kb) 17
18
19 Strain fitness (log2 ratio) -1
0
1 at 16.462 kb on - strand, within GFF298 at 16.644 kb on + strand, within GFF298 at 16.823 kb on - strand, within GFF298 at 16.903 kb on - strand, within GFF298 at 16.925 kb on + strand, within GFF298 at 16.928 kb on - strand, within GFF298 at 17.050 kb on + strand at 17.458 kb on + strand at 17.458 kb on + strand at 17.519 kb on - strand at 17.543 kb on + strand, within GFF300 at 17.724 kb on - strand, within GFF300 at 17.776 kb on + strand, within GFF300 at 17.832 kb on - strand, within GFF300 at 18.035 kb on + strand, within GFF300 at 18.056 kb on + strand, within GFF300 at 18.071 kb on + strand, within GFF300 at 18.268 kb on + strand at 18.323 kb on + strand at 18.324 kb on - strand at 18.325 kb on + strand at 18.325 kb on + strand at 18.326 kb on - strand at 18.605 kb on + strand at 18.612 kb on + strand at 18.613 kb on - strand at 18.755 kb on + strand, within GFF301 at 18.810 kb on + strand, within GFF301 at 18.810 kb on + strand, within GFF301 at 18.811 kb on - strand, within GFF301 at 18.811 kb on - strand, within GFF301 at 18.811 kb on - strand, within GFF301 at 18.823 kb on + strand, within GFF301 at 19.079 kb on + strand, within GFF301 at 19.086 kb on + strand, within GFF301 at 19.087 kb on - strand, within GFF301 at 19.087 kb on - strand, within GFF301 at 19.157 kb on + strand, within GFF301 at 19.162 kb on - strand, within GFF301 at 19.217 kb on + strand, within GFF301 at 19.217 kb on + strand, within GFF301
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 16,462 - GFF298 0.59 +0.2 16,644 + GFF298 0.69 +1.5 16,823 - GFF298 0.80 -0.8 16,903 - GFF298 0.85 +0.2 16,925 + GFF298 0.86 +0.4 16,928 - GFF298 0.86 -0.4 17,050 + +0.3 17,458 + +1.0 17,458 + +0.3 17,519 - -0.3 17,543 + GFF300 0.11 -0.1 17,724 - GFF300 0.34 -0.3 17,776 + GFF300 0.41 -0.4 17,832 - GFF300 0.48 -0.5 18,035 + GFF300 0.74 +0.0 18,056 + GFF300 0.76 -0.2 18,071 + GFF300 0.78 -0.5 18,268 + -0.4 18,323 + +0.0 18,324 - -0.2 18,325 + -0.0 18,325 + +0.3 18,326 - +0.3 18,605 + +0.1 18,612 + +0.3 18,613 - +0.7 18,755 + GFF301 0.20 +0.4 18,810 + GFF301 0.26 +0.1 18,810 + GFF301 0.26 -0.4 18,811 - GFF301 0.26 -0.5 18,811 - GFF301 0.26 -0.0 18,811 - GFF301 0.26 -0.2 18,823 + GFF301 0.28 -0.0 19,079 + GFF301 0.56 +0.3 19,086 + GFF301 0.56 -0.8 19,087 - GFF301 0.56 +0.1 19,087 - GFF301 0.56 -0.4 19,157 + GFF301 0.64 +0.8 19,162 - GFF301 0.65 -0.8 19,217 + GFF301 0.71 -0.5 19,217 + GFF301 0.71 -0.9
Or see this region's nucleotide sequence