Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2966 and GFF2967 are separated by 117 nucleotides GFF2967 and GFF2968 are separated by 5 nucleotides GFF2968 and GFF2969 are separated by 262 nucleotides
GFF2966 - Transcriptional regulator NanR, at 50,623 to 51,405
GFF2966
GFF2967 - ClpXP protease specificity-enhancing factor / Stringent starvation protein B, at 51,523 to 52,023
GFF2967
GFF2968 - Stringent starvation protein A, at 52,029 to 52,667
GFF2968
GFF2969 - FIG074102: hypothetical protein, at 52,930 to 53,724
GFF2969
Position (kb) 52
53 Strain fitness (log2 ratio) -2
-1
0
1 at 51.233 kb on - strand, within GFF2966 at 51.233 kb on - strand, within GFF2966 at 51.354 kb on + strand at 51.440 kb on - strand at 51.448 kb on + strand at 51.449 kb on - strand at 51.673 kb on + strand, within GFF2967 at 51.891 kb on - strand, within GFF2967 at 51.891 kb on - strand, within GFF2967 at 52.110 kb on - strand, within GFF2968 at 52.112 kb on - strand, within GFF2968 at 52.189 kb on + strand, within GFF2968 at 52.335 kb on - strand, within GFF2968 at 52.565 kb on + strand, within GFF2968 at 52.605 kb on - strand at 52.606 kb on + strand at 52.606 kb on + strand at 52.607 kb on - strand at 52.607 kb on - strand at 52.607 kb on - strand at 52.607 kb on - strand at 52.682 kb on - strand at 52.684 kb on - strand at 52.732 kb on - strand at 52.820 kb on + strand at 52.820 kb on + strand at 52.821 kb on - strand at 52.880 kb on + strand at 52.915 kb on - strand at 52.931 kb on + strand at 52.931 kb on + strand at 52.940 kb on - strand at 53.019 kb on + strand, within GFF2969 at 53.020 kb on - strand, within GFF2969 at 53.049 kb on + strand, within GFF2969 at 53.160 kb on + strand, within GFF2969 at 53.161 kb on - strand, within GFF2969 at 53.174 kb on + strand, within GFF2969 at 53.177 kb on + strand, within GFF2969 at 53.177 kb on + strand, within GFF2969 at 53.178 kb on - strand, within GFF2969 at 53.185 kb on - strand, within GFF2969 at 53.248 kb on + strand, within GFF2969 at 53.276 kb on + strand, within GFF2969 at 53.325 kb on - strand, within GFF2969 at 53.382 kb on + strand, within GFF2969 at 53.538 kb on - strand, within GFF2969 at 53.549 kb on + strand, within GFF2969 at 53.624 kb on - strand, within GFF2969
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 51,233 - GFF2966 0.78 -0.2 51,233 - GFF2966 0.78 +0.2 51,354 + -0.8 51,440 - -0.3 51,448 + +0.9 51,449 - +0.9 51,673 + GFF2967 0.30 -0.1 51,891 - GFF2967 0.73 +0.5 51,891 - GFF2967 0.73 +0.4 52,110 - GFF2968 0.13 -0.1 52,112 - GFF2968 0.13 -0.7 52,189 + GFF2968 0.25 -0.3 52,335 - GFF2968 0.48 -0.6 52,565 + GFF2968 0.84 -1.7 52,605 - -0.5 52,606 + -0.4 52,606 + -0.9 52,607 - -0.9 52,607 - -1.5 52,607 - -0.5 52,607 - +0.6 52,682 - -1.8 52,684 - -1.9 52,732 - -0.6 52,820 + -0.9 52,820 + +1.5 52,821 - +0.7 52,880 + -0.1 52,915 - -0.1 52,931 + +0.3 52,931 + -0.1 52,940 - -0.4 53,019 + GFF2969 0.11 +0.3 53,020 - GFF2969 0.11 +0.3 53,049 + GFF2969 0.15 -0.2 53,160 + GFF2969 0.29 +0.1 53,161 - GFF2969 0.29 +0.1 53,174 + GFF2969 0.31 +0.4 53,177 + GFF2969 0.31 -1.1 53,177 + GFF2969 0.31 -0.3 53,178 - GFF2969 0.31 -1.0 53,185 - GFF2969 0.32 -0.6 53,248 + GFF2969 0.40 +0.2 53,276 + GFF2969 0.44 +0.5 53,325 - GFF2969 0.50 +0.4 53,382 + GFF2969 0.57 -0.4 53,538 - GFF2969 0.76 -0.1 53,549 + GFF2969 0.78 +0.3 53,624 - GFF2969 0.87 +0.0
Or see this region's nucleotide sequence