Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2954

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
31,042	-				+0.2
31,048	-				+1.6
31,119	-				+0.4
31,165	+		GFF2953	0.12	-0.0
31,167	+		GFF2953	0.12	-0.5
31,211	-		GFF2953	0.19	+1.2
31,230	-		GFF2953	0.22	-0.4
31,230	-		GFF2953	0.22	+0.6
31,283	+		GFF2953	0.30	+0.0
31,725	-				-0.6
31,852	+				+1.7
31,852	+				+0.0
31,901	+				-0.2
31,901	+				-0.8
32,128	-				-1.3
32,148	-				-1.0
32,153	+				-0.8
32,287	+		GFF2954	0.14	-0.1
32,945	-		GFF2954	0.42	-1.1
32,945	-		GFF2954	0.42	-1.0
32,945	-		GFF2954	0.42	-1.0
32,945	-		GFF2954	0.42	+0.1
32,945	-		GFF2954	0.42	-1.1
32,945	-		GFF2954	0.42	-0.7
32,945	-		GFF2954	0.42	-0.8
33,031	+		GFF2954	0.45	-0.9
33,066	-		GFF2954	0.47	-1.9
33,279	-		GFF2954	0.56	-0.6
33,341	+		GFF2954	0.59	-2.4
33,440	+		GFF2954	0.63	+0.5
33,441	-		GFF2954	0.63	-2.1
33,447	-		GFF2954	0.63	-0.7
33,447	-		GFF2954	0.63	+0.2
33,498	-		GFF2954	0.65	-1.1
33,560	-		GFF2954	0.68	-1.2
33,649	-		GFF2954	0.72	-0.6
33,695	-		GFF2954	0.74	-0.8
33,695	-		GFF2954	0.74	-1.3
33,695	-		GFF2954	0.74	-1.2
33,856	-		GFF2954	0.81	-2.6
33,959	+		GFF2954	0.85	-0.7
33,992	+		GFF2954	0.87	-1.1
33,993	-		GFF2954	0.87	-0.8
34,093	+				-1.5
34,114	-				-0.4
34,114	-				-1.3
34,274	-				-1.0
34,274	-				-0.2
34,276	+				-1.9
34,276	+				-1.3
34,277	-				-1.7
34,305	-				-3.9
34,334	+				+0.0
34,345	+				+0.4
34,363	+				+0.0
34,376	-				+0.3
34,405	-				+1.1
34,463	-				-0.6
34,556	-		GFF2955	0.17	-0.1
34,561	-		GFF2955	0.18	-0.1
34,676	+		GFF2955	0.30	+0.1
34,676	+		GFF2955	0.30	+0.3
34,677	-		GFF2955	0.30	+0.1
34,695	-		GFF2955	0.32	+1.3
34,947	+		GFF2955	0.59	+0.1
34,950	+		GFF2955	0.59	+0.6
35,026	+		GFF2955	0.68	+0.1
35,027	-		GFF2955	0.68	-0.9
35,080	+		GFF2955	0.73	+0.9
35,234	+		GFF2955	0.90	+0.5
35,258	+				-0.2
35,304	-				+0.3