Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF281

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF280 and GFF281 are separated by 121 nucleotidesGFF281 and GFF282 are separated by 1 nucleotidesGFF282 and GFF283 overlap by 2 nucleotidesGFF283 and GFF284 are separated by 257 nucleotides GFF280 - Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH, at 29 to 757 GFF280 GFF281 - Uncharacterized protein YidR, at 879 to 2,105 GFF281 GFF282 - Outer membrane lipoprotein YidQ, at 2,107 to 2,367 GFF282 GFF283 - hypothetical protein, at 2,366 to 2,485 GFF283 GFF284 - 16 kDa heat shock protein A, at 2,743 to 3,162 GFF284 Position (kb) 0 1 2 3Strain fitness (log2 ratio) -1 0 1 2at 0.218 kb on + strand, within GFF280at 0.219 kb on - strand, within GFF280at 0.426 kb on + strand, within GFF280at 0.459 kb on - strand, within GFF280at 0.613 kb on - strand, within GFF280at 0.620 kb on + strand, within GFF280at 0.621 kb on - strand, within GFF280at 0.621 kb on - strand, within GFF280at 0.815 kb on - strandat 0.815 kb on - strandat 0.843 kb on + strandat 0.843 kb on + strandat 0.844 kb on - strandat 0.917 kb on + strandat 0.917 kb on + strandat 0.918 kb on - strandat 0.918 kb on - strandat 0.929 kb on + strandat 0.968 kb on - strandat 0.968 kb on - strandat 1.104 kb on + strand, within GFF281at 1.104 kb on + strand, within GFF281at 1.104 kb on + strand, within GFF281at 1.112 kb on + strand, within GFF281at 1.200 kb on - strand, within GFF281at 1.220 kb on + strand, within GFF281at 1.221 kb on - strand, within GFF281at 1.301 kb on + strand, within GFF281at 1.301 kb on + strand, within GFF281at 1.305 kb on + strand, within GFF281at 1.307 kb on + strand, within GFF281at 1.421 kb on + strand, within GFF281at 1.422 kb on - strand, within GFF281at 1.485 kb on - strand, within GFF281at 1.591 kb on + strand, within GFF281at 1.694 kb on + strand, within GFF281at 1.700 kb on + strand, within GFF281at 1.758 kb on - strand, within GFF281at 1.856 kb on - strand, within GFF281at 1.876 kb on + strand, within GFF281at 1.890 kb on - strand, within GFF281at 2.080 kb on + strandat 2.081 kb on - strandat 2.104 kb on - strandat 2.232 kb on + strand, within GFF282at 2.232 kb on + strand, within GFF282at 2.336 kb on + strand, within GFF282at 2.336 kb on + strand, within GFF282at 2.341 kb on - strand, within GFF282at 2.341 kb on - strand, within GFF282at 2.341 kb on - strand, within GFF282at 2.390 kb on - strand, within GFF283at 2.390 kb on - strand, within GFF283at 2.410 kb on + strand, within GFF283at 2.481 kb on + strandat 2.484 kb on - strandat 2.613 kb on + strandat 2.624 kb on + strandat 2.628 kb on + strandat 2.642 kb on + strandat 2.644 kb on + strandat 2.651 kb on + strandat 2.652 kb on - strandat 2.742 kb on + strandat 2.823 kb on + strand, within GFF284at 2.887 kb on + strand, within GFF284at 2.997 kb on + strand, within GFF284at 2.998 kb on - strand, within GFF284at 2.998 kb on - strand, within GFF284at 3.001 kb on + strand, within GFF284at 3.001 kb on + strand, within GFF284at 3.002 kb on - strand, within GFF284at 3.039 kb on + strand, within GFF284at 3.039 kb on + strand, within GFF284at 3.100 kb on + strand, within GFF284at 3.100 kb on + strand, within GFF284at 3.101 kb on - strand, within GFF284at 3.102 kb on + strand, within GFF284

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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218 + GFF280 0.26 -0.1
219 - GFF280 0.26 +0.2
426 + GFF280 0.54 +0.4
459 - GFF280 0.59 +0.1
613 - GFF280 0.80 +0.0
620 + GFF280 0.81 +0.5
621 - GFF280 0.81 +1.8
621 - GFF280 0.81 -0.2
815 - +0.7
815 - +0.0
843 + +0.6
843 + -0.3
844 - -0.1
917 + -1.3
917 + +0.7
918 - +0.4
918 - +1.0
929 + -0.3
968 - +0.4
968 - +0.6
1,104 + GFF281 0.18 +0.1
1,104 + GFF281 0.18 +0.9
1,104 + GFF281 0.18 -0.3
1,112 + GFF281 0.19 -0.2
1,200 - GFF281 0.26 -0.1
1,220 + GFF281 0.28 +0.2
1,221 - GFF281 0.28 -0.1
1,301 + GFF281 0.34 +0.1
1,301 + GFF281 0.34 -0.0
1,305 + GFF281 0.35 +2.7
1,307 + GFF281 0.35 -0.3
1,421 + GFF281 0.44 +0.1
1,422 - GFF281 0.44 +0.2
1,485 - GFF281 0.49 +0.4
1,591 + GFF281 0.58 +0.5
1,694 + GFF281 0.66 +0.2
1,700 + GFF281 0.67 +0.6
1,758 - GFF281 0.72 +0.1
1,856 - GFF281 0.80 -0.2
1,876 + GFF281 0.81 +1.0
1,890 - GFF281 0.82 +0.3
2,080 + +0.2
2,081 - -0.1
2,104 - -0.3
2,232 + GFF282 0.48 +0.4
2,232 + GFF282 0.48 -0.1
2,336 + GFF282 0.88 -0.2
2,336 + GFF282 0.88 +0.0
2,341 - GFF282 0.90 +1.4
2,341 - GFF282 0.90 -0.3
2,341 - GFF282 0.90 +0.2
2,390 - GFF283 0.20 -0.4
2,390 - GFF283 0.20 -0.1
2,410 + GFF283 0.37 -0.1
2,481 + -0.3
2,484 - +0.4
2,613 + +0.4
2,624 + -0.2
2,628 + -0.1
2,642 + +0.6
2,644 + +0.2
2,651 + -1.1
2,652 - -0.0
2,742 + +0.2
2,823 + GFF284 0.19 +0.8
2,887 + GFF284 0.34 -0.5
2,997 + GFF284 0.60 +0.3
2,998 - GFF284 0.61 -0.1
2,998 - GFF284 0.61 +0.4
3,001 + GFF284 0.61 -0.0
3,001 + GFF284 0.61 -0.3
3,002 - GFF284 0.62 +0.1
3,039 + GFF284 0.70 +0.2
3,039 + GFF284 0.70 -1.2
3,100 + GFF284 0.85 +0.5
3,100 + GFF284 0.85 -0.9
3,101 - GFF284 0.85 -0.2
3,102 + GFF284 0.85 +0.3

Or see this region's nucleotide sequence