Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2784

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2782 and GFF2783 are separated by 275 nucleotidesGFF2783 and GFF2784 are separated by 116 nucleotidesGFF2784 and GFF2785 are separated by 158 nucleotides GFF2782 - FIG00554739: membrane protein YchH, at 305,832 to 306,110 GFF2782 GFF2783 - Peptidyl-tRNA hydrolase (EC 3.1.1.29), at 306,386 to 306,970 GFF2783 GFF2784 - GTP-binding and nucleic acid-binding protein YchF, at 307,087 to 308,178 GFF2784 GFF2785 - FIG01045804: hypothetical protein, at 308,337 to 309,602 GFF2785 Position (kb) 307 308 309Strain fitness (log2 ratio) -2 -1 0 1at 306.111 kb on - strandat 306.345 kb on + strandat 306.346 kb on - strandat 306.350 kb on + strandat 306.968 kb on + strandat 307.008 kb on - strandat 307.277 kb on + strand, within GFF2784at 307.458 kb on + strand, within GFF2784at 307.467 kb on + strand, within GFF2784at 307.697 kb on - strand, within GFF2784at 308.077 kb on - strandat 309.123 kb on - strand, within GFF2785at 309.128 kb on - strand, within GFF2785

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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306,111 - +0.7
306,345 + +0.2
306,346 - +0.3
306,350 + +0.0
306,968 + +0.4
307,008 - -0.2
307,277 + GFF2784 0.17 -1.8
307,458 + GFF2784 0.34 -1.0
307,467 + GFF2784 0.35 -1.3
307,697 - GFF2784 0.56 -1.4
308,077 - -0.4
309,123 - GFF2785 0.62 +0.3
309,128 - GFF2785 0.62 +0.5

Or see this region's nucleotide sequence