Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2771 and GFF2772 are separated by 3 nucleotides GFF2772 and GFF2773 are separated by 8 nucleotides GFF2773 and GFF2774 overlap by 1 nucleotides
GFF2771 - FIG002708: Protein SirB1, at 296,568 to 297,377
GFF2771
GFF2772 - FIG002082: Protein SirB2, at 297,381 to 297,758
GFF2772
GFF2773 - Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2, at 297,767 to 298,600
GFF2773
GFF2774 - Peptide chain release factor 1, at 298,600 to 299,682
GFF2774
Position (kb) 297
298
299 Strain fitness (log2 ratio) -2
-1
0
1 at 296.898 kb on - strand, within GFF2771 at 296.900 kb on + strand, within GFF2771 at 296.901 kb on - strand, within GFF2771 at 297.063 kb on + strand, within GFF2771 at 297.428 kb on - strand, within GFF2772 at 297.428 kb on - strand, within GFF2772 at 297.503 kb on + strand, within GFF2772 at 297.504 kb on - strand, within GFF2772 at 297.626 kb on + strand, within GFF2772 at 297.630 kb on + strand, within GFF2772 at 297.630 kb on + strand, within GFF2772 at 297.630 kb on + strand, within GFF2772 at 297.828 kb on - strand at 297.943 kb on + strand, within GFF2773 at 297.943 kb on + strand, within GFF2773 at 297.949 kb on + strand, within GFF2773 at 298.004 kb on + strand, within GFF2773 at 298.114 kb on + strand, within GFF2773 at 298.114 kb on + strand, within GFF2773 at 298.114 kb on + strand, within GFF2773 at 298.115 kb on - strand, within GFF2773 at 298.489 kb on - strand, within GFF2773 at 298.489 kb on - strand, within GFF2773 at 298.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 296,898 - GFF2771 0.41 +0.1 296,900 + GFF2771 0.41 -1.2 296,901 - GFF2771 0.41 -0.6 297,063 + GFF2771 0.61 -0.7 297,428 - GFF2772 0.12 -0.1 297,428 - GFF2772 0.12 +0.2 297,503 + GFF2772 0.32 -0.1 297,504 - GFF2772 0.33 -0.3 297,626 + GFF2772 0.65 -0.1 297,630 + GFF2772 0.66 -0.0 297,630 + GFF2772 0.66 +0.1 297,630 + GFF2772 0.66 -0.4 297,828 - -2.4 297,943 + GFF2773 0.21 -1.2 297,943 + GFF2773 0.21 -0.9 297,949 + GFF2773 0.22 -2.7 298,004 + GFF2773 0.28 -2.0 298,114 + GFF2773 0.42 -0.1 298,114 + GFF2773 0.42 -1.0 298,114 + GFF2773 0.42 -1.5 298,115 - GFF2773 0.42 -0.5 298,489 - GFF2773 0.87 -0.9 298,489 - GFF2773 0.87 -1.5 298,602 - -0.7
Or see this region's nucleotide sequence