Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2728

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2726 and GFF2727 are separated by 479 nucleotidesGFF2727 and GFF2728 are separated by 89 nucleotidesGFF2728 and GFF2729 are separated by 73 nucleotidesGFF2729 and GFF2730 are separated by 19 nucleotides GFF2726 - Tryptophan synthase alpha chain (EC 4.2.1.20), at 249,890 to 250,696 GFF2726 GFF2727 - Conidiation-specific protein 10, at 251,176 to 251,358 GFF2727 GFF2728 - Protein yciF, at 251,448 to 251,951 GFF2728 GFF2729 - Protein YciE, at 252,025 to 252,531 GFF2729 GFF2730 - Manganese catalase (EC 1.11.1.6), at 252,551 to 253,429 GFF2730 Position (kb) 251 252Strain fitness (log2 ratio) -1 0 1at 250.927 kb on - strandat 251.173 kb on - strandat 251.367 kb on - strandat 252.033 kb on + strandat 252.159 kb on + strand, within GFF2729at 252.578 kb on + strandat 252.580 kb on + strandat 252.602 kb on - strandat 252.871 kb on + strand, within GFF2730at 252.947 kb on + strand, within GFF2730at 252.950 kb on - strand, within GFF2730

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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250,927 - +0.2
251,173 - +0.1
251,367 - -0.8
252,033 + -0.1
252,159 + GFF2729 0.26 -0.6
252,578 + -0.3
252,580 + -0.5
252,602 - -0.6
252,871 + GFF2730 0.36 +0.2
252,947 + GFF2730 0.45 +0.3
252,950 - GFF2730 0.45 +0.0

Or see this region's nucleotide sequence