Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF265 and GFF266 are separated by 29 nucleotides GFF266 and GFF267 are separated by 7 nucleotides GFF267 and GFF268 are separated by 185 nucleotides
GFF265 - Twin-arginine translocation protein TatC, at 40,147 to 40,926
GFF265
GFF266 - Deoxyribonuclease TatD, at 40,956 to 41,750
GFF266
GFF267 - Transcriptional activator RfaH, at 41,758 to 42,246
GFF267
GFF268 - 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-), at 42,432 to 43,910
GFF268
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 40.814 kb on - strand, within GFF265 at 40.852 kb on + strand at 40.853 kb on - strand at 41.061 kb on - strand, within GFF266 at 41.066 kb on - strand, within GFF266 at 41.066 kb on - strand, within GFF266 at 41.066 kb on - strand, within GFF266 at 41.198 kb on + strand, within GFF266 at 41.199 kb on - strand, within GFF266 at 41.308 kb on + strand, within GFF266 at 41.342 kb on + strand, within GFF266 at 41.476 kb on - strand, within GFF266 at 41.476 kb on - strand, within GFF266 at 41.476 kb on - strand, within GFF266 at 41.476 kb on - strand, within GFF266 at 41.524 kb on + strand, within GFF266 at 41.672 kb on - strand at 41.970 kb on + strand, within GFF267 at 42.045 kb on + strand, within GFF267 at 42.045 kb on + strand, within GFF267 at 42.046 kb on - strand, within GFF267 at 42.051 kb on + strand, within GFF267 at 42.051 kb on + strand, within GFF267 at 42.051 kb on + strand, within GFF267 at 42.052 kb on - strand, within GFF267 at 42.056 kb on - strand, within GFF267 at 42.117 kb on + strand, within GFF267 at 42.170 kb on - strand, within GFF267 at 42.170 kb on - strand, within GFF267 at 42.170 kb on - strand, within GFF267 at 42.224 kb on + strand at 42.229 kb on + strand at 42.233 kb on + strand at 42.246 kb on + strand at 42.247 kb on - strand at 42.303 kb on + strand at 42.308 kb on - strand at 42.309 kb on + strand at 42.310 kb on - strand at 42.310 kb on - strand at 42.405 kb on + strand at 42.405 kb on + strand at 42.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 40,814 - GFF265 0.86 +0.7 40,852 + -0.2 40,853 - +0.0 41,061 - GFF266 0.13 -0.3 41,066 - GFF266 0.14 +0.5 41,066 - GFF266 0.14 +0.4 41,066 - GFF266 0.14 +0.6 41,198 + GFF266 0.30 +0.4 41,199 - GFF266 0.31 +0.2 41,308 + GFF266 0.44 -0.1 41,342 + GFF266 0.49 -0.4 41,476 - GFF266 0.65 -0.2 41,476 - GFF266 0.65 -0.0 41,476 - GFF266 0.65 +0.1 41,476 - GFF266 0.65 +0.0 41,524 + GFF266 0.71 +0.3 41,672 - -0.6 41,970 + GFF267 0.43 -1.9 42,045 + GFF267 0.59 -2.3 42,045 + GFF267 0.59 +0.8 42,046 - GFF267 0.59 -3.5 42,051 + GFF267 0.60 -0.4 42,051 + GFF267 0.60 -3.4 42,051 + GFF267 0.60 -1.2 42,052 - GFF267 0.60 -2.9 42,056 - GFF267 0.61 -3.2 42,117 + GFF267 0.73 +0.2 42,170 - GFF267 0.84 -2.6 42,170 - GFF267 0.84 +0.7 42,170 - GFF267 0.84 -3.5 42,224 + +1.4 42,229 + +1.5 42,233 + -0.6 42,246 + -1.9 42,247 - -0.3 42,303 + +0.1 42,308 - -0.3 42,309 + +0.1 42,310 - +0.7 42,310 - +0.3 42,405 + -0.0 42,405 + -0.5 42,418 - +0.2
Or see this region's nucleotide sequence