Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2644 and GFF2645 are separated by 49 nucleotides GFF2645 and GFF2646 overlap by 8 nucleotides GFF2646 and GFF2647 are separated by 18 nucleotides GFF2647 and GFF2648 are separated by 51 nucleotides
GFF2644 - Universal stress protein F, at 171,749 to 172,183
GFF2644
GFF2645 - Ethidium bromide-methyl viologen resistance protein EmrE, at 172,233 to 172,571
GFF2645
GFF2646 - FIG01046477: hypothetical protein, at 172,564 to 172,716
GFF2646
GFF2647 - Integrase, at 172,735 to 172,875
GFF2647
GFF2648 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 172,927 to 173,862
GFF2648
Position (kb) 172
173 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 171.569 kb on - strand at 171.594 kb on + strand at 171.598 kb on + strand at 171.616 kb on + strand at 171.616 kb on + strand at 171.619 kb on + strand at 171.684 kb on - strand at 171.908 kb on + strand, within GFF2644 at 172.108 kb on + strand, within GFF2644 at 172.112 kb on - strand, within GFF2644 at 172.116 kb on - strand, within GFF2644 at 172.116 kb on - strand, within GFF2644 at 172.182 kb on - strand at 172.267 kb on - strand, within GFF2645 at 172.345 kb on - strand, within GFF2645 at 172.355 kb on + strand, within GFF2645 at 172.425 kb on - strand, within GFF2645 at 172.425 kb on - strand, within GFF2645 at 172.425 kb on - strand, within GFF2645 at 172.425 kb on - strand, within GFF2645 at 172.457 kb on + strand, within GFF2645 at 172.542 kb on - strand at 172.565 kb on + strand at 172.571 kb on + strand at 172.571 kb on + strand at 172.615 kb on - strand, within GFF2646 at 172.619 kb on - strand, within GFF2646 at 172.659 kb on + strand, within GFF2646 at 172.702 kb on + strand at 172.716 kb on + strand at 172.717 kb on - strand at 172.717 kb on - strand at 172.717 kb on - strand at 173.079 kb on + strand, within GFF2648 at 173.080 kb on - strand, within GFF2648 at 173.080 kb on - strand, within GFF2648 at 173.080 kb on - strand, within GFF2648 at 173.083 kb on + strand, within GFF2648 at 173.084 kb on - strand, within GFF2648 at 173.085 kb on + strand, within GFF2648 at 173.187 kb on + strand, within GFF2648 at 173.188 kb on - strand, within GFF2648 at 173.200 kb on + strand, within GFF2648 at 173.512 kb on - strand, within GFF2648 at 173.656 kb on - strand, within GFF2648
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 171,569 - -0.6 171,594 + -0.1 171,598 + +0.4 171,616 + -0.5 171,616 + -0.3 171,619 + -2.8 171,684 - -0.1 171,908 + GFF2644 0.37 -0.1 172,108 + GFF2644 0.83 +0.0 172,112 - GFF2644 0.83 +0.2 172,116 - GFF2644 0.84 -0.2 172,116 - GFF2644 0.84 +0.1 172,182 - +1.2 172,267 - GFF2645 0.10 -0.0 172,345 - GFF2645 0.33 +0.5 172,355 + GFF2645 0.36 +0.4 172,425 - GFF2645 0.57 -0.4 172,425 - GFF2645 0.57 -1.0 172,425 - GFF2645 0.57 +1.0 172,425 - GFF2645 0.57 -0.0 172,457 + GFF2645 0.66 +0.1 172,542 - +0.5 172,565 + -0.5 172,571 + +0.7 172,571 + +0.1 172,615 - GFF2646 0.33 -0.6 172,619 - GFF2646 0.36 -1.0 172,659 + GFF2646 0.62 -1.1 172,702 + -0.2 172,716 + -0.4 172,717 - +0.3 172,717 - +0.2 172,717 - +0.2 173,079 + GFF2648 0.16 -1.5 173,080 - GFF2648 0.16 +0.9 173,080 - GFF2648 0.16 +0.0 173,080 - GFF2648 0.16 -0.0 173,083 + GFF2648 0.17 -0.4 173,084 - GFF2648 0.17 -0.1 173,085 + GFF2648 0.17 -0.2 173,187 + GFF2648 0.28 +0.5 173,188 - GFF2648 0.28 +0.3 173,200 + GFF2648 0.29 -0.2 173,512 - GFF2648 0.62 -0.8 173,656 - GFF2648 0.78 -0.1
Or see this region's nucleotide sequence