Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2633 and GFF2634 overlap by 4 nucleotides GFF2634 and GFF2635 are separated by 265 nucleotides GFF2635 and GFF2636 are separated by 7 nucleotides GFF2636 and GFF2637 overlap by 1 nucleotides
GFF2633 - FMN-dependent NADH-azoreductase, at 161,055 to 161,660
GFF2633
GFF2634 - Gfa-like protein, at 161,657 to 161,983
GFF2634
GFF2635 - Putative uncharacterized protein ydbL, may be related to amine metabolism, at 162,249 to 162,572
GFF2635
GFF2636 - Uncharacterized protein ynbE; probable lipoprotein STY1424, at 162,580 to 162,771
GFF2636
GFF2637 - Putative uncharacterized protein ydbH, at 162,771 to 165,407
GFF2637
Position (kb) 162
163 Strain fitness (log2 ratio) -1
0
1 at 161.659 kb on - strand at 161.864 kb on - strand, within GFF2634 at 161.864 kb on - strand, within GFF2634 at 161.866 kb on - strand, within GFF2634 at 162.029 kb on - strand at 162.114 kb on + strand at 162.115 kb on - strand at 162.126 kb on + strand at 162.370 kb on - strand, within GFF2635 at 162.553 kb on - strand at 162.553 kb on - strand at 162.636 kb on + strand, within GFF2636 at 162.705 kb on + strand, within GFF2636 at 162.729 kb on + strand, within GFF2636 at 162.777 kb on - strand at 162.824 kb on + strand at 162.930 kb on - strand at 162.987 kb on - strand at 163.027 kb on + strand at 163.027 kb on + strand at 163.345 kb on - strand, within GFF2637 at 163.425 kb on + strand, within GFF2637
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 161,659 - +0.0 161,864 - GFF2634 0.63 +0.2 161,864 - GFF2634 0.63 +0.1 161,866 - GFF2634 0.64 +0.1 162,029 - +0.5 162,114 + -0.1 162,115 - +0.4 162,126 + +0.8 162,370 - GFF2635 0.37 +0.1 162,553 - +0.2 162,553 - -0.7 162,636 + GFF2636 0.29 -1.1 162,705 + GFF2636 0.65 -0.4 162,729 + GFF2636 0.78 -1.1 162,777 - -0.4 162,824 + -0.4 162,930 - -0.2 162,987 - -0.5 163,027 + +0.2 163,027 + +0.1 163,345 - GFF2637 0.22 -0.1 163,425 + GFF2637 0.25 -0.1
Or see this region's nucleotide sequence