Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2569 and GFF2570 overlap by 1 nucleotides GFF2570 and GFF2571 overlap by 4 nucleotides GFF2571 and GFF2572 are separated by 105 nucleotides
GFF2569 - Respiratory nitrate reductase beta chain (EC 1.7.99.4), at 90,042 to 91,586
GFF2569
GFF2570 - Respiratory nitrate reductase delta chain (EC 1.7.99.4), at 91,586 to 92,281
GFF2570
GFF2571 - Respiratory nitrate reductase gamma chain (EC 1.7.99.4), at 92,278 to 92,958
GFF2571
GFF2572 - Phenazine biosynthesis protein PhzF, at 93,064 to 93,957
GFF2572
Position (kb) 92
93 Strain fitness (log2 ratio) -1
0
1 at 91.371 kb on + strand, within GFF2569 at 91.371 kb on + strand, within GFF2569 at 91.371 kb on + strand, within GFF2569 at 91.378 kb on - strand, within GFF2569 at 91.551 kb on - strand at 91.561 kb on + strand at 91.927 kb on - strand, within GFF2570 at 91.927 kb on - strand, within GFF2570 at 91.962 kb on + strand, within GFF2570 at 92.206 kb on - strand, within GFF2570 at 92.288 kb on - strand at 92.288 kb on - strand at 92.322 kb on + strand at 92.377 kb on + strand, within GFF2571 at 92.378 kb on - strand, within GFF2571 at 92.379 kb on + strand, within GFF2571 at 92.449 kb on - strand, within GFF2571 at 92.509 kb on + strand, within GFF2571 at 92.510 kb on - strand, within GFF2571 at 92.510 kb on - strand, within GFF2571 at 92.579 kb on + strand, within GFF2571 at 92.580 kb on - strand, within GFF2571 at 92.580 kb on - strand, within GFF2571 at 92.604 kb on - strand, within GFF2571 at 92.659 kb on - strand, within GFF2571 at 92.661 kb on + strand, within GFF2571 at 92.662 kb on - strand, within GFF2571 at 92.775 kb on + strand, within GFF2571 at 92.776 kb on - strand, within GFF2571 at 93.032 kb on + strand at 93.153 kb on - strand at 93.242 kb on + strand, within GFF2572 at 93.242 kb on + strand, within GFF2572 at 93.248 kb on - strand, within GFF2572 at 93.263 kb on + strand, within GFF2572 at 93.305 kb on - strand, within GFF2572 at 93.320 kb on + strand, within GFF2572 at 93.404 kb on - strand, within GFF2572 at 93.450 kb on - strand, within GFF2572 at 93.450 kb on - strand, within GFF2572
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 91,371 + GFF2569 0.86 +0.3 91,371 + GFF2569 0.86 +0.6 91,371 + GFF2569 0.86 +0.4 91,378 - GFF2569 0.86 +0.2 91,551 - +0.6 91,561 + +0.1 91,927 - GFF2570 0.49 -0.1 91,927 - GFF2570 0.49 +0.1 91,962 + GFF2570 0.54 +0.5 92,206 - GFF2570 0.89 +0.4 92,288 - +0.1 92,288 - -0.0 92,322 + +0.0 92,377 + GFF2571 0.15 +0.9 92,378 - GFF2571 0.15 -0.2 92,379 + GFF2571 0.15 +0.4 92,449 - GFF2571 0.25 +0.1 92,509 + GFF2571 0.34 -0.1 92,510 - GFF2571 0.34 +0.1 92,510 - GFF2571 0.34 +0.3 92,579 + GFF2571 0.44 +0.1 92,580 - GFF2571 0.44 +0.2 92,580 - GFF2571 0.44 -0.8 92,604 - GFF2571 0.48 +0.7 92,659 - GFF2571 0.56 +0.3 92,661 + GFF2571 0.56 +1.1 92,662 - GFF2571 0.56 +0.3 92,775 + GFF2571 0.73 -0.2 92,776 - GFF2571 0.73 -0.1 93,032 + +1.2 93,153 - -1.0 93,242 + GFF2572 0.20 -0.4 93,242 + GFF2572 0.20 -0.9 93,248 - GFF2572 0.21 +0.0 93,263 + GFF2572 0.22 +0.5 93,305 - GFF2572 0.27 +0.8 93,320 + GFF2572 0.29 -0.5 93,404 - GFF2572 0.38 +0.3 93,450 - GFF2572 0.43 +1.0 93,450 - GFF2572 0.43 -0.4
Or see this region's nucleotide sequence