Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2452

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2451 and GFF2452 are separated by 82 nucleotidesGFF2452 and GFF2453 are separated by 55 nucleotides GFF2451 - Lysine/cadaverine antiporter membrane protein CadB, at 67,021 to 68,352 GFF2451 GFF2452 - Lysine decarboxylase, inducible (EC 4.1.1.18), at 68,435 to 70,579 GFF2452 GFF2453 - Di/tripeptide permease YjdL, at 70,635 to 72,095 GFF2453 Position (kb) 68 69 70 71Strain fitness (log2 ratio) -1 0 1at 67.596 kb on + strand, within GFF2451at 67.724 kb on - strand, within GFF2451at 67.724 kb on - strand, within GFF2451at 67.724 kb on - strand, within GFF2451at 67.724 kb on - strand, within GFF2451at 68.395 kb on + strandat 68.434 kb on + strandat 68.614 kb on + strandat 68.618 kb on + strandat 68.662 kb on + strand, within GFF2452at 68.747 kb on + strand, within GFF2452at 68.748 kb on - strand, within GFF2452at 68.816 kb on - strand, within GFF2452at 68.849 kb on + strand, within GFF2452at 68.869 kb on + strand, within GFF2452at 69.071 kb on - strand, within GFF2452at 69.119 kb on - strand, within GFF2452at 69.169 kb on + strand, within GFF2452at 69.169 kb on + strand, within GFF2452at 69.205 kb on + strand, within GFF2452at 69.205 kb on + strand, within GFF2452at 69.245 kb on - strand, within GFF2452at 69.245 kb on - strand, within GFF2452at 69.347 kb on - strand, within GFF2452at 69.347 kb on - strand, within GFF2452at 69.357 kb on - strand, within GFF2452at 69.371 kb on + strand, within GFF2452at 69.372 kb on - strand, within GFF2452at 69.372 kb on - strand, within GFF2452at 69.373 kb on + strand, within GFF2452at 69.373 kb on + strand, within GFF2452at 69.374 kb on - strand, within GFF2452at 69.384 kb on - strand, within GFF2452at 69.384 kb on - strand, within GFF2452at 69.440 kb on + strand, within GFF2452at 69.441 kb on - strand, within GFF2452at 69.458 kb on - strand, within GFF2452at 69.461 kb on + strand, within GFF2452at 69.574 kb on + strand, within GFF2452at 69.641 kb on + strand, within GFF2452at 69.652 kb on - strand, within GFF2452at 69.718 kb on + strand, within GFF2452at 69.719 kb on - strand, within GFF2452at 70.025 kb on + strand, within GFF2452at 70.026 kb on - strand, within GFF2452at 70.026 kb on - strand, within GFF2452at 70.216 kb on + strand, within GFF2452at 70.248 kb on + strand, within GFF2452at 70.254 kb on - strand, within GFF2452at 70.723 kb on + strandat 70.806 kb on + strand, within GFF2453at 70.806 kb on + strand, within GFF2453at 70.961 kb on + strand, within GFF2453at 70.982 kb on + strand, within GFF2453at 70.994 kb on + strand, within GFF2453at 70.994 kb on + strand, within GFF2453at 70.994 kb on + strand, within GFF2453at 71.124 kb on + strand, within GFF2453at 71.225 kb on + strand, within GFF2453at 71.284 kb on + strand, within GFF2453at 71.381 kb on + strand, within GFF2453at 71.391 kb on - strand, within GFF2453at 71.391 kb on - strand, within GFF2453

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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67,596 + GFF2451 0.43 +0.0
67,724 - GFF2451 0.53 -0.1
67,724 - GFF2451 0.53 -0.5
67,724 - GFF2451 0.53 +0.1
67,724 - GFF2451 0.53 +0.1
68,395 + +1.5
68,434 + -0.2
68,614 + -0.2
68,618 + +0.1
68,662 + GFF2452 0.11 -0.3
68,747 + GFF2452 0.15 +0.2
68,748 - GFF2452 0.15 -0.3
68,816 - GFF2452 0.18 -0.3
68,849 + GFF2452 0.19 -0.1
68,869 + GFF2452 0.20 -0.5
69,071 - GFF2452 0.30 -0.1
69,119 - GFF2452 0.32 -0.3
69,169 + GFF2452 0.34 -0.6
69,169 + GFF2452 0.34 -0.5
69,205 + GFF2452 0.36 -0.5
69,205 + GFF2452 0.36 -0.6
69,245 - GFF2452 0.38 -0.1
69,245 - GFF2452 0.38 -1.1
69,347 - GFF2452 0.43 +0.6
69,347 - GFF2452 0.43 -0.5
69,357 - GFF2452 0.43 -0.1
69,371 + GFF2452 0.44 -0.6
69,372 - GFF2452 0.44 -0.5
69,372 - GFF2452 0.44 +0.1
69,373 + GFF2452 0.44 +0.1
69,373 + GFF2452 0.44 -1.3
69,374 - GFF2452 0.44 +0.2
69,384 - GFF2452 0.44 +0.1
69,384 - GFF2452 0.44 -0.3
69,440 + GFF2452 0.47 -0.1
69,441 - GFF2452 0.47 -0.3
69,458 - GFF2452 0.48 +0.0
69,461 + GFF2452 0.48 +0.1
69,574 + GFF2452 0.53 +0.4
69,641 + GFF2452 0.56 -0.6
69,652 - GFF2452 0.57 +1.0
69,718 + GFF2452 0.60 -0.1
69,719 - GFF2452 0.60 +0.3
70,025 + GFF2452 0.74 -0.4
70,026 - GFF2452 0.74 -0.7
70,026 - GFF2452 0.74 -0.1
70,216 + GFF2452 0.83 +0.1
70,248 + GFF2452 0.85 -0.0
70,254 - GFF2452 0.85 +0.7
70,723 + +0.2
70,806 + GFF2453 0.12 -0.2
70,806 + GFF2453 0.12 +0.2
70,961 + GFF2453 0.22 +0.2
70,982 + GFF2453 0.24 +0.3
70,994 + GFF2453 0.25 +0.3
70,994 + GFF2453 0.25 +0.3
70,994 + GFF2453 0.25 +1.1
71,124 + GFF2453 0.33 +0.3
71,225 + GFF2453 0.40 -1.3
71,284 + GFF2453 0.44 +0.3
71,381 + GFF2453 0.51 +0.4
71,391 - GFF2453 0.52 +0.8
71,391 - GFF2453 0.52 +0.1

Or see this region's nucleotide sequence