Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2402

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,903	+				-0.6
1,906	-				+0.6
1,906	-				+0.7
1,934	-				-0.1
1,984	+				-0.5
1,989	+				+0.6
2,127	+				+0.8
2,180	-				+1.0
2,183	+				+0.3
2,705	+				-0.4
2,705	+				+0.2
2,707	+				+0.1
2,709	+				+0.1
2,709	+				+0.1
2,880	-				+0.7
2,882	+				-0.1
2,882	+				-1.9
2,882	+				-0.5
2,882	+				-0.1
2,882	+				+1.3
2,927	+				+1.4
2,971	+				+0.2
3,049	+				+0.4
3,092	+				-0.1
3,180	-				+0.0
3,184	-				+1.0
3,184	-				+1.7
3,266	+				-0.1
3,267	-				+0.4
3,306	-				+0.3
3,348	-				-0.1
3,411	-				+0.4
3,470	+				-0.3
3,503	+				+0.5
3,561	-				-0.1
3,629	+		GFF2402	0.10	-0.1
3,722	+		GFF2402	0.11	+0.3
3,735	-		GFF2402	0.12	-0.5
3,740	+		GFF2402	0.12	+0.3
3,820	-		GFF2402	0.13	+1.1
3,822	-		GFF2402	0.13	+0.2
3,830	-		GFF2402	0.13	-0.6
3,896	-		GFF2402	0.14	-0.3
3,931	+		GFF2402	0.14	+0.2
3,931	+		GFF2402	0.14	-0.3
3,932	-		GFF2402	0.14	-0.2
4,045	+		GFF2402	0.16	-0.4
4,045	+		GFF2402	0.16	+1.7
4,050	-		GFF2402	0.16	+0.4
4,141	+		GFF2402	0.17	+0.3
4,142	-		GFF2402	0.17	+0.4
4,199	+		GFF2402	0.18	-0.1
4,302	-		GFF2402	0.19	-0.3
4,383	+		GFF2402	0.20	+1.1
4,576	-		GFF2402	0.23	+0.2
4,806	+		GFF2402	0.26	+0.2
4,806	+		GFF2402	0.26	+0.6
4,878	-		GFF2402	0.27	+0.2
4,878	-		GFF2402	0.27	+0.4
4,971	-		GFF2402	0.29	+0.2
4,994	+		GFF2402	0.29	-0.3
4,994	+		GFF2402	0.29	-0.9
5,005	+		GFF2402	0.29	+0.3
5,174	-		GFF2402	0.31	+0.5
5,174	-		GFF2402	0.31	-0.1
5,174	-		GFF2402	0.31	-0.3
5,204	-		GFF2402	0.32	+0.5
5,482	+		GFF2402	0.36	+0.5
5,482	+		GFF2402	0.36	+0.2
5,485	+		GFF2402	0.36	-0.5
5,582	-		GFF2402	0.37	-0.2
5,863	+		GFF2402	0.41	+0.9
5,911	+		GFF2402	0.41	+0.8
6,015	-		GFF2402	0.43	+0.3
6,083	-		GFF2402	0.44	+0.0
6,083	-		GFF2402	0.44	+0.7
6,083	-		GFF2402	0.44	+0.1
6,123	+		GFF2402	0.44	-0.7
6,123	+		GFF2402	0.44	-0.3
6,143	+		GFF2402	0.45	+0.1
6,295	+		GFF2402	0.47	+0.3
6,296	-		GFF2402	0.47	-0.1
6,296	-		GFF2402	0.47	+0.5
6,316	-		GFF2402	0.47	+0.4
6,407	+		GFF2402	0.48	-0.6
6,562	+		GFF2402	0.50	-0.2
6,776	+		GFF2402	0.53	-0.2
6,825	-		GFF2402	0.54	+1.1
7,130	+		GFF2402	0.58	+0.9
7,131	-		GFF2402	0.58	-0.2
7,132	+		GFF2402	0.58	+0.1
7,233	-		GFF2402	0.59	-0.0
7,357	+		GFF2402	0.61	+1.3
7,357	+		GFF2402	0.61	-0.0
7,358	-		GFF2402	0.61	+0.4
7,556	+		GFF2402	0.64	+1.9
7,557	-		GFF2402	0.64	-0.2
7,657	-		GFF2402	0.65	-0.0
8,023	+		GFF2402	0.70	+0.2
8,024	-		GFF2402	0.70	+0.2
8,112	-		GFF2402	0.72	+0.7
8,113	+		GFF2402	0.72	+1.0
8,113	+		GFF2402	0.72	-0.1
8,250	-		GFF2402	0.73	+0.5
8,361	-		GFF2402	0.75	-0.1
8,470	-		GFF2402	0.76	+0.5
8,571	+		GFF2402	0.78	-0.3
8,668	+		GFF2402	0.79	-0.7
8,826	-		GFF2402	0.81	+1.2
8,876	+		GFF2402	0.82	+0.4
8,876	+		GFF2402	0.82	-0.7
8,876	+		GFF2402	0.82	+0.4
8,877	-		GFF2402	0.82	+0.8
9,029	+		GFF2402	0.84	+0.2
9,145	+		GFF2402	0.86	+0.2
9,145	+		GFF2402	0.86	+0.3
9,194	-		GFF2402	0.86	-0.2
9,660	-				+0.3
9,662	-				+0.9
9,662	-				-0.3
9,662	-				-1.4
9,772	-				-0.4
9,772	-				-0.8
9,772	-				+0.4
9,772	-				-0.1
9,773	+				+0.8
9,773	+				+0.7
9,887	+				+0.1
9,915	+				-0.3
10,062	-				+0.0
10,199	+				+0.2
10,200	-				-0.0
10,283	-				-0.2
10,448	-				+0.4
10,451	-				+0.9
10,451	-				-0.4
10,454	+				-0.0
10,454	+				+0.2
10,563	-				-0.1
10,621	+				-0.9
10,622	-				-0.5
10,625	-				+0.6
10,753	+				+0.1
10,754	-				-0.6
10,754	-				+0.3
10,754	-				+0.0
10,791	-				-1.2
10,804	-				-0.0
10,804	-				+0.1
10,804	-				+0.1
10,898	+				+0.1
10,950	-		GFF2403	0.11	-0.2
10,953	-		GFF2403	0.11	-0.1
11,053	+		GFF2403	0.12	+0.8
11,053	+		GFF2403	0.12	+0.1
11,054	-		GFF2403	0.12	+0.4
11,087	-		GFF2403	0.13	+0.9