Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2286

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2285 and GFF2286 are separated by 262 nucleotidesGFF2286 and GFF2287 are separated by 10 nucleotidesGFF2287 and GFF2288 are separated by 9 nucleotides GFF2285 - CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26), at 73,510 to 74,265 GFF2285 GFF2286 - Melibiose carrier protein, Na+/melibiose symporter, at 74,528 to 75,862 GFF2286 GFF2287 - Fructokinase (EC 2.7.1.4), at 75,873 to 76,832 GFF2287 GFF2288 - ADP-ribosylglycohydrolase (EC 3.2.-.-), at 76,842 to 77,882 GFF2288 Position (kb) 74 75 76Strain fitness (log2 ratio) -2 -1 0 1at 73.643 kb on + strand, within GFF2285at 73.733 kb on + strand, within GFF2285at 73.733 kb on + strand, within GFF2285at 73.733 kb on + strand, within GFF2285at 73.747 kb on + strand, within GFF2285at 73.752 kb on + strand, within GFF2285at 73.832 kb on - strand, within GFF2285at 73.833 kb on + strand, within GFF2285at 73.834 kb on - strand, within GFF2285at 73.834 kb on - strand, within GFF2285at 73.858 kb on - strand, within GFF2285at 74.083 kb on - strand, within GFF2285at 74.147 kb on + strand, within GFF2285at 74.197 kb on - strandat 74.238 kb on + strandat 74.238 kb on + strandat 74.238 kb on + strandat 74.239 kb on - strandat 74.295 kb on - strandat 74.295 kb on - strandat 74.402 kb on + strandat 74.461 kb on + strandat 74.618 kb on + strandat 74.619 kb on - strandat 74.624 kb on + strandat 74.624 kb on + strandat 74.625 kb on - strandat 74.665 kb on - strand, within GFF2286at 74.665 kb on - strand, within GFF2286at 74.832 kb on - strand, within GFF2286at 74.832 kb on - strand, within GFF2286at 74.833 kb on + strand, within GFF2286at 74.834 kb on - strand, within GFF2286at 74.856 kb on - strand, within GFF2286at 74.856 kb on - strand, within GFF2286at 74.864 kb on + strand, within GFF2286at 74.865 kb on - strand, within GFF2286at 74.865 kb on - strand, within GFF2286at 74.867 kb on - strand, within GFF2286at 74.873 kb on - strand, within GFF2286at 74.873 kb on - strand, within GFF2286at 74.885 kb on + strand, within GFF2286at 74.885 kb on + strand, within GFF2286at 75.109 kb on + strand, within GFF2286at 75.284 kb on - strand, within GFF2286at 75.413 kb on + strand, within GFF2286at 75.508 kb on + strand, within GFF2286at 75.819 kb on - strandat 76.173 kb on + strand, within GFF2287at 76.174 kb on - strand, within GFF2287at 76.174 kb on - strand, within GFF2287at 76.196 kb on + strand, within GFF2287at 76.355 kb on - strand, within GFF2287at 76.424 kb on + strand, within GFF2287at 76.559 kb on + strand, within GFF2287at 76.610 kb on + strand, within GFF2287at 76.610 kb on + strand, within GFF2287at 76.762 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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73,643 + GFF2285 0.18 +0.1
73,733 + GFF2285 0.29 +0.0
73,733 + GFF2285 0.29 +0.2
73,733 + GFF2285 0.29 -0.4
73,747 + GFF2285 0.31 -0.1
73,752 + GFF2285 0.32 -1.0
73,832 - GFF2285 0.43 -0.2
73,833 + GFF2285 0.43 +0.3
73,834 - GFF2285 0.43 +0.2
73,834 - GFF2285 0.43 -0.2
73,858 - GFF2285 0.46 +0.0
74,083 - GFF2285 0.76 -0.3
74,147 + GFF2285 0.84 +0.5
74,197 - +0.2
74,238 + +0.0
74,238 + +0.1
74,238 + +0.0
74,239 - +0.6
74,295 - +0.2
74,295 - -0.4
74,402 + +0.2
74,461 + +0.1
74,618 + -0.5
74,619 - -0.3
74,624 + +0.0
74,624 + -0.2
74,625 - -0.1
74,665 - GFF2286 0.10 +0.4
74,665 - GFF2286 0.10 +1.2
74,832 - GFF2286 0.23 -0.6
74,832 - GFF2286 0.23 +1.4
74,833 + GFF2286 0.23 -0.0
74,834 - GFF2286 0.23 +0.4
74,856 - GFF2286 0.25 -1.9
74,856 - GFF2286 0.25 +0.1
74,864 + GFF2286 0.25 +0.6
74,865 - GFF2286 0.25 -0.2
74,865 - GFF2286 0.25 +0.4
74,867 - GFF2286 0.25 -0.0
74,873 - GFF2286 0.26 -1.0
74,873 - GFF2286 0.26 -0.3
74,885 + GFF2286 0.27 -0.2
74,885 + GFF2286 0.27 +0.5
75,109 + GFF2286 0.44 -0.2
75,284 - GFF2286 0.57 -0.0
75,413 + GFF2286 0.66 -0.0
75,508 + GFF2286 0.73 +0.2
75,819 - -1.0
76,173 + GFF2287 0.31 -0.1
76,174 - GFF2287 0.31 +0.4
76,174 - GFF2287 0.31 +0.6
76,196 + GFF2287 0.34 +0.2
76,355 - GFF2287 0.50 -0.2
76,424 + GFF2287 0.57 +0.1
76,559 + GFF2287 0.71 -0.1
76,610 + GFF2287 0.77 +0.4
76,610 + GFF2287 0.77 -0.2
76,762 + +0.6

Or see this region's nucleotide sequence