Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2041

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2039 and GFF2040 overlap by 4 nucleotidesGFF2040 and GFF2041 overlap by 8 nucleotidesGFF2041 and GFF2042 are separated by 71 nucleotides GFF2039 - Putative cytochrome oxidase, at 5,805 to 6,803 GFF2039 GFF2040 - FIG074102: hypothetical protein, at 6,800 to 7,027 GFF2040 GFF2041 - DNA ligase (EC 6.5.1.2), at 7,020 to 9,035 GFF2041 GFF2042 - Cell division protein ZipA, at 9,107 to 10,093 GFF2042 Position (kb) 7 8 9 10Strain fitness (log2 ratio) -1 0 1at 6.122 kb on + strand, within GFF2039at 6.257 kb on - strand, within GFF2039at 6.264 kb on - strand, within GFF2039at 6.593 kb on + strand, within GFF2039at 6.682 kb on + strand, within GFF2039at 6.683 kb on - strand, within GFF2039at 6.908 kb on - strand, within GFF2040at 7.032 kb on + strandat 9.036 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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6,122 + GFF2039 0.32 +0.1
6,257 - GFF2039 0.45 -1.4
6,264 - GFF2039 0.46 -1.6
6,593 + GFF2039 0.79 -0.2
6,682 + GFF2039 0.88 +0.0
6,683 - GFF2039 0.88 -0.4
6,908 - GFF2040 0.47 -0.4
7,032 + +0.8
9,036 - -0.0

Or see this region's nucleotide sequence