Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2031

Experiment: C.elegans, mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2028 and GFF2029 are separated by 11 nucleotidesGFF2029 and GFF2030 are separated by 76 nucleotidesGFF2030 and GFF2031 are separated by 88 nucleotides GFF2028 - Type III secretion and flagellar regulator RtsA, at 34,717 to 35,592 GFF2028 GFF2029 - Flagellar regulon repressor RtsB, at 35,604 to 35,876 GFF2029 GFF2030 - FIG074102: hypothetical protein, at 35,953 to 36,114 GFF2030 GFF2031 - FIG01046611: hypothetical protein, at 36,203 to 36,391 GFF2031 Position (kb) 36 37Strain fitness (log2 ratio) -1 0 1at 35.990 kb on + strand, within GFF2030at 36.009 kb on - strand, within GFF2030at 36.024 kb on + strand, within GFF2030at 36.055 kb on - strand, within GFF2030at 36.069 kb on + strand, within GFF2030at 36.112 kb on + strandat 36.113 kb on - strandat 36.127 kb on + strandat 36.255 kb on - strand, within GFF2031at 36.392 kb on + strandat 36.396 kb on + strandat 36.397 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
remove
35,990 + GFF2030 0.23 +0.9
36,009 - GFF2030 0.35 +0.3
36,024 + GFF2030 0.44 +0.4
36,055 - GFF2030 0.63 -0.0
36,069 + GFF2030 0.72 +0.9
36,112 + -0.4
36,113 - +0.2
36,127 + +0.5
36,255 - GFF2031 0.28 -1.3
36,392 + -0.1
36,396 + +0.3
36,397 - +0.3

Or see this region's nucleotide sequence