Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2024 and GFF2025 are separated by 247 nucleotides GFF2025 and GFF2026 overlap by 4 nucleotides GFF2026 and GFF2027 are separated by 394 nucleotides
GFF2024 - Nonspecific acid phosphatase precursor (EC 3.1.3.2), at 32,133 to 32,885
GFF2024
GFF2025 - FIG001353: Acetyltransferase, at 33,133 to 33,624
GFF2025
GFF2026 - FIG032766: hypothetical protein, at 33,621 to 33,914
GFF2026
GFF2027 - putative cytoplasmic protein, at 34,309 to 34,452
GFF2027
Position (kb) 33
34 Strain fitness (log2 ratio) -1
0
1 at 32.452 kb on + strand, within GFF2024 at 32.570 kb on + strand, within GFF2024 at 32.571 kb on - strand, within GFF2024 at 32.613 kb on + strand, within GFF2024 at 32.618 kb on + strand, within GFF2024 at 32.764 kb on + strand, within GFF2024 at 32.848 kb on + strand at 33.084 kb on - strand at 33.114 kb on - strand at 33.197 kb on - strand, within GFF2025 at 33.270 kb on + strand, within GFF2025 at 33.396 kb on + strand, within GFF2025 at 33.456 kb on - strand, within GFF2025 at 33.467 kb on - strand, within GFF2025 at 33.550 kb on - strand, within GFF2025 at 33.553 kb on + strand, within GFF2025 at 33.554 kb on - strand, within GFF2025 at 33.582 kb on + strand at 33.583 kb on - strand at 33.583 kb on - strand at 33.914 kb on + strand at 33.931 kb on - strand at 33.931 kb on - strand at 33.946 kb on - strand at 33.951 kb on + strand at 33.951 kb on + strand at 34.115 kb on + strand at 34.141 kb on + strand at 34.165 kb on - strand at 34.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 32,452 + GFF2024 0.42 +0.6 32,570 + GFF2024 0.58 +0.6 32,571 - GFF2024 0.58 -0.5 32,613 + GFF2024 0.64 +0.0 32,618 + GFF2024 0.64 +0.1 32,764 + GFF2024 0.84 +0.3 32,848 + +0.6 33,084 - -0.1 33,114 - -0.3 33,197 - GFF2025 0.13 +0.3 33,270 + GFF2025 0.28 -0.2 33,396 + GFF2025 0.53 +0.1 33,456 - GFF2025 0.66 +0.1 33,467 - GFF2025 0.68 +0.2 33,550 - GFF2025 0.85 +0.7 33,553 + GFF2025 0.85 +0.4 33,554 - GFF2025 0.86 -0.0 33,582 + -0.5 33,583 - -0.3 33,583 - -0.6 33,914 + +0.4 33,931 - -0.1 33,931 - -0.4 33,946 - +0.5 33,951 + -0.1 33,951 + +0.5 34,115 + +0.2 34,141 + -0.1 34,165 - +0.1 34,293 - +0.3
Or see this region's nucleotide sequence