Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1917

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1915 and GFF1916 are separated by 10 nucleotidesGFF1916 and GFF1917 overlap by 4 nucleotidesGFF1917 and GFF1918 are separated by 182 nucleotides GFF1915 - Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1), at 108,521 to 109,297 GFF1915 GFF1916 - Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1), at 109,308 to 110,015 GFF1916 GFF1917 - Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1), at 110,012 to 110,698 GFF1917 GFF1918 - Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1), at 110,881 to 111,663 GFF1918 Position (kb) 110 111Strain fitness (log2 ratio) -2 -1 0 1at 109.034 kb on + strand, within GFF1915at 109.035 kb on - strand, within GFF1915at 109.142 kb on - strand, within GFF1915at 109.192 kb on + strand, within GFF1915at 109.278 kb on - strandat 109.372 kb on + strandat 109.383 kb on + strand, within GFF1916at 109.383 kb on + strand, within GFF1916at 109.388 kb on - strand, within GFF1916at 109.388 kb on - strand, within GFF1916at 109.440 kb on - strand, within GFF1916at 109.548 kb on + strand, within GFF1916at 109.565 kb on + strand, within GFF1916at 109.583 kb on + strand, within GFF1916at 109.698 kb on + strand, within GFF1916at 109.767 kb on - strand, within GFF1916at 109.769 kb on - strand, within GFF1916at 109.781 kb on - strand, within GFF1916at 109.792 kb on - strand, within GFF1916at 109.798 kb on - strand, within GFF1916at 110.057 kb on + strandat 110.087 kb on - strand, within GFF1917at 110.101 kb on + strand, within GFF1917at 110.102 kb on - strand, within GFF1917at 110.102 kb on - strand, within GFF1917at 110.102 kb on - strand, within GFF1917at 110.253 kb on + strand, within GFF1917at 110.275 kb on + strand, within GFF1917at 110.408 kb on - strand, within GFF1917at 110.410 kb on + strand, within GFF1917at 110.508 kb on - strand, within GFF1917at 110.545 kb on - strand, within GFF1917at 110.676 kb on - strandat 110.727 kb on + strandat 110.805 kb on + strandat 110.883 kb on - strandat 110.935 kb on - strandat 111.010 kb on - strand, within GFF1918at 111.063 kb on + strand, within GFF1918at 111.066 kb on - strand, within GFF1918at 111.159 kb on - strand, within GFF1918at 111.348 kb on + strand, within GFF1918at 111.462 kb on + strand, within GFF1918at 111.462 kb on + strand, within GFF1918at 111.462 kb on + strand, within GFF1918at 111.463 kb on - strand, within GFF1918at 111.463 kb on - strand, within GFF1918at 111.478 kb on - strand, within GFF1918at 111.557 kb on + strand, within GFF1918at 111.557 kb on + strand, within GFF1918at 111.557 kb on + strand, within GFF1918at 111.558 kb on - strand, within GFF1918at 111.561 kb on + strand, within GFF1918

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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109,034 + GFF1915 0.66 +0.2
109,035 - GFF1915 0.66 +1.0
109,142 - GFF1915 0.80 +0.2
109,192 + GFF1915 0.86 -0.6
109,278 - -1.8
109,372 + +0.3
109,383 + GFF1916 0.11 +0.0
109,383 + GFF1916 0.11 -0.1
109,388 - GFF1916 0.11 -0.0
109,388 - GFF1916 0.11 +0.1
109,440 - GFF1916 0.19 +0.1
109,548 + GFF1916 0.34 +0.3
109,565 + GFF1916 0.36 +0.5
109,583 + GFF1916 0.39 -0.6
109,698 + GFF1916 0.55 -0.1
109,767 - GFF1916 0.65 -0.1
109,769 - GFF1916 0.65 -0.2
109,781 - GFF1916 0.67 +0.4
109,792 - GFF1916 0.68 -0.2
109,798 - GFF1916 0.69 +0.0
110,057 + -0.6
110,087 - GFF1917 0.11 +0.0
110,101 + GFF1917 0.13 +0.1
110,102 - GFF1917 0.13 -0.2
110,102 - GFF1917 0.13 +0.3
110,102 - GFF1917 0.13 +1.2
110,253 + GFF1917 0.35 -1.5
110,275 + GFF1917 0.38 +0.7
110,408 - GFF1917 0.58 +0.9
110,410 + GFF1917 0.58 +1.2
110,508 - GFF1917 0.72 -0.0
110,545 - GFF1917 0.78 -0.2
110,676 - +0.2
110,727 + +0.1
110,805 + -0.7
110,883 - +0.2
110,935 - +0.6
111,010 - GFF1918 0.16 -0.4
111,063 + GFF1918 0.23 +0.5
111,066 - GFF1918 0.24 +0.7
111,159 - GFF1918 0.36 +0.0
111,348 + GFF1918 0.60 +0.2
111,462 + GFF1918 0.74 +0.1
111,462 + GFF1918 0.74 -2.0
111,462 + GFF1918 0.74 +0.7
111,463 - GFF1918 0.74 +0.2
111,463 - GFF1918 0.74 +0.1
111,478 - GFF1918 0.76 -0.1
111,557 + GFF1918 0.86 +0.6
111,557 + GFF1918 0.86 +0.9
111,557 + GFF1918 0.86 -1.3
111,558 - GFF1918 0.86 -0.4
111,561 + GFF1918 0.87 +0.1

Or see this region's nucleotide sequence