Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF187 and GFF188 are separated by 53 nucleotides GFF188 and GFF189 overlap by 1 nucleotides GFF189 and GFF190 overlap by 4 nucleotides
GFF187 - Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor, at 180,920 to 183,280
GFF187
GFF188 - Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8), at 183,334 to 184,620
GFF188
GFF189 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 184,620 to 185,609
GFF189
GFF190 - SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182), at 185,606 to 186,427
GFF190
Position (kb) 183
184
185 Strain fitness (log2 ratio) -2
-1
0
1 at 183.218 kb on + strand at 183.274 kb on + strand at 183.405 kb on - strand at 183.559 kb on - strand, within GFF188 at 183.706 kb on + strand, within GFF188 at 183.707 kb on - strand, within GFF188 at 183.744 kb on + strand, within GFF188 at 183.744 kb on + strand, within GFF188 at 183.984 kb on + strand, within GFF188 at 183.988 kb on + strand, within GFF188 at 183.989 kb on - strand, within GFF188 at 184.417 kb on - strand, within GFF188 at 184.427 kb on + strand, within GFF188 at 184.485 kb on + strand, within GFF188 at 184.485 kb on + strand, within GFF188 at 184.491 kb on - strand, within GFF188 at 184.530 kb on + strand at 184.598 kb on - strand at 184.603 kb on - strand at 184.603 kb on - strand at 184.614 kb on + strand at 184.906 kb on - strand, within GFF189 at 184.906 kb on - strand, within GFF189 at 184.906 kb on - strand, within GFF189 at 185.178 kb on - strand, within GFF189 at 185.287 kb on + strand, within GFF189 at 185.287 kb on + strand, within GFF189 at 185.288 kb on - strand, within GFF189 at 185.350 kb on + strand, within GFF189 at 185.361 kb on - strand, within GFF189 at 185.383 kb on + strand, within GFF189 at 185.438 kb on - strand, within GFF189
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 183,218 + +0.3 183,274 + +0.0 183,405 - +0.2 183,559 - GFF188 0.17 -1.6 183,706 + GFF188 0.29 -2.0 183,707 - GFF188 0.29 -1.0 183,744 + GFF188 0.32 -1.9 183,744 + GFF188 0.32 -1.4 183,984 + GFF188 0.51 -1.4 183,988 + GFF188 0.51 -0.4 183,989 - GFF188 0.51 -1.4 184,417 - GFF188 0.84 -1.3 184,427 + GFF188 0.85 -2.2 184,485 + GFF188 0.89 -1.5 184,485 + GFF188 0.89 -1.2 184,491 - GFF188 0.90 -0.1 184,530 + -0.8 184,598 - -2.6 184,603 - -1.1 184,603 - -1.1 184,614 + -0.7 184,906 - GFF189 0.29 -1.0 184,906 - GFF189 0.29 -1.0 184,906 - GFF189 0.29 -1.6 185,178 - GFF189 0.56 -0.8 185,287 + GFF189 0.67 +0.4 185,287 + GFF189 0.67 -1.1 185,288 - GFF189 0.67 -1.2 185,350 + GFF189 0.74 -0.9 185,361 - GFF189 0.75 -0.3 185,383 + GFF189 0.77 -0.6 185,438 - GFF189 0.83 -1.7
Or see this region's nucleotide sequence