Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1851 and GFF1852 are separated by 55 nucleotides GFF1852 and GFF1853 are separated by 13 nucleotides
GFF1851 - L-rhamnonate transporter (predicted by genome context), at 43,262 to 44,551
GFF1851
GFF1852 - L-rhamnonate dehydratase (EC 4.2.1.90), at 44,607 to 45,812
GFF1852
GFF1853 - Transcriptional regulator, IclR family, at 45,826 to 46,608
GFF1853
Position (kb) 44
45
46 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.669 kb on + strand, within GFF1851 at 43.739 kb on - strand, within GFF1851 at 43.791 kb on - strand, within GFF1851 at 43.813 kb on - strand, within GFF1851 at 43.816 kb on + strand, within GFF1851 at 43.906 kb on + strand, within GFF1851 at 44.115 kb on + strand, within GFF1851 at 44.116 kb on - strand, within GFF1851 at 44.169 kb on - strand, within GFF1851 at 44.169 kb on - strand, within GFF1851 at 44.225 kb on + strand, within GFF1851 at 44.421 kb on - strand, within GFF1851 at 44.474 kb on + strand at 44.474 kb on + strand at 44.478 kb on + strand at 44.492 kb on - strand at 44.501 kb on + strand at 44.537 kb on + strand at 44.616 kb on - strand at 44.617 kb on + strand at 44.795 kb on + strand, within GFF1852 at 44.804 kb on + strand, within GFF1852 at 44.807 kb on + strand, within GFF1852 at 44.931 kb on - strand, within GFF1852 at 44.933 kb on + strand, within GFF1852 at 45.046 kb on + strand, within GFF1852 at 45.046 kb on + strand, within GFF1852 at 45.354 kb on - strand, within GFF1852 at 45.448 kb on + strand, within GFF1852 at 45.449 kb on - strand, within GFF1852 at 45.451 kb on + strand, within GFF1852 at 45.451 kb on + strand, within GFF1852 at 45.525 kb on - strand, within GFF1852 at 45.590 kb on + strand, within GFF1852 at 45.625 kb on - strand, within GFF1852 at 46.274 kb on + strand, within GFF1853 at 46.422 kb on - strand, within GFF1853 at 46.422 kb on - strand, within GFF1853 at 46.593 kb on + strand at 46.718 kb on + strand at 46.719 kb on - strand at 46.720 kb on + strand at 46.720 kb on + strand at 46.743 kb on + strand at 46.743 kb on + strand at 46.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 43,669 + GFF1851 0.32 -0.2 43,739 - GFF1851 0.37 -0.4 43,791 - GFF1851 0.41 +2.1 43,813 - GFF1851 0.43 -0.8 43,816 + GFF1851 0.43 +1.0 43,906 + GFF1851 0.50 +0.4 44,115 + GFF1851 0.66 -0.1 44,116 - GFF1851 0.66 -1.3 44,169 - GFF1851 0.70 +0.2 44,169 - GFF1851 0.70 +0.4 44,225 + GFF1851 0.75 -0.1 44,421 - GFF1851 0.90 +0.1 44,474 + +0.2 44,474 + +0.2 44,478 + +0.2 44,492 - -0.1 44,501 + -0.3 44,537 + +0.5 44,616 - -0.0 44,617 + +0.4 44,795 + GFF1852 0.16 +0.6 44,804 + GFF1852 0.16 -1.4 44,807 + GFF1852 0.17 +0.5 44,931 - GFF1852 0.27 +0.1 44,933 + GFF1852 0.27 +0.1 45,046 + GFF1852 0.36 -0.4 45,046 + GFF1852 0.36 -0.5 45,354 - GFF1852 0.62 -0.7 45,448 + GFF1852 0.70 -1.9 45,449 - GFF1852 0.70 +0.5 45,451 + GFF1852 0.70 -0.0 45,451 + GFF1852 0.70 +0.5 45,525 - GFF1852 0.76 +0.0 45,590 + GFF1852 0.82 +0.7 45,625 - GFF1852 0.84 -0.3 46,274 + GFF1853 0.57 +0.2 46,422 - GFF1853 0.76 -0.3 46,422 - GFF1853 0.76 -0.2 46,593 + +0.7 46,718 + -0.0 46,719 - +0.4 46,720 + -0.0 46,720 + -1.0 46,743 + -0.8 46,743 + +0.0 46,751 - +0.7
Or see this region's nucleotide sequence