Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1848 and GFF1849 are separated by 109 nucleotides GFF1849 and GFF1850 are separated by 5 nucleotides GFF1850 and GFF1851 are separated by 25 nucleotides
GFF1848 - FIG074102: hypothetical protein, at 41,119 to 42,141
GFF1848
GFF1849 - Molybdopterin binding motif, CinA N-terminal domain / C-terminal domain of CinA type E, at 42,251 to 42,427
GFF1849
GFF1850 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.-), at 42,433 to 43,236
GFF1850
GFF1851 - L-rhamnonate transporter (predicted by genome context), at 43,262 to 44,551
GFF1851
Position (kb) 42
43
44 Strain fitness (log2 ratio) -1
0
1
2 at 41.562 kb on - strand, within GFF1848 at 42.127 kb on + strand at 42.207 kb on + strand at 42.211 kb on + strand at 42.215 kb on + strand at 42.331 kb on + strand, within GFF1849 at 42.365 kb on + strand, within GFF1849 at 42.377 kb on - strand, within GFF1849 at 42.379 kb on - strand, within GFF1849 at 42.519 kb on + strand, within GFF1850 at 42.520 kb on - strand, within GFF1850 at 42.520 kb on - strand, within GFF1850 at 42.627 kb on - strand, within GFF1850 at 42.680 kb on + strand, within GFF1850 at 42.823 kb on - strand, within GFF1850 at 42.823 kb on - strand, within GFF1850 at 42.824 kb on + strand, within GFF1850 at 42.825 kb on - strand, within GFF1850 at 42.825 kb on - strand, within GFF1850 at 42.999 kb on + strand, within GFF1850 at 43.000 kb on - strand, within GFF1850 at 43.054 kb on + strand, within GFF1850 at 43.065 kb on - strand, within GFF1850 at 43.102 kb on + strand, within GFF1850 at 43.103 kb on - strand, within GFF1850 at 43.105 kb on + strand, within GFF1850 at 43.147 kb on - strand, within GFF1850 at 43.148 kb on + strand, within GFF1850 at 43.148 kb on + strand, within GFF1850 at 43.149 kb on - strand, within GFF1850 at 43.418 kb on - strand, within GFF1851 at 43.485 kb on - strand, within GFF1851 at 43.508 kb on + strand, within GFF1851 at 43.669 kb on + strand, within GFF1851 at 43.739 kb on - strand, within GFF1851 at 43.791 kb on - strand, within GFF1851 at 43.813 kb on - strand, within GFF1851 at 43.816 kb on + strand, within GFF1851 at 43.906 kb on + strand, within GFF1851 at 44.115 kb on + strand, within GFF1851 at 44.116 kb on - strand, within GFF1851 at 44.169 kb on - strand, within GFF1851 at 44.169 kb on - strand, within GFF1851 at 44.225 kb on + strand, within GFF1851
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 41,562 - GFF1848 0.43 -1.2 42,127 + -0.3 42,207 + -0.3 42,211 + -0.5 42,215 + -0.3 42,331 + GFF1849 0.45 -0.3 42,365 + GFF1849 0.64 -0.9 42,377 - GFF1849 0.71 +0.3 42,379 - GFF1849 0.72 -0.6 42,519 + GFF1850 0.11 +0.9 42,520 - GFF1850 0.11 +0.2 42,520 - GFF1850 0.11 +0.2 42,627 - GFF1850 0.24 +0.4 42,680 + GFF1850 0.31 +0.3 42,823 - GFF1850 0.49 +0.7 42,823 - GFF1850 0.49 +0.0 42,824 + GFF1850 0.49 +0.3 42,825 - GFF1850 0.49 +0.1 42,825 - GFF1850 0.49 -0.7 42,999 + GFF1850 0.70 -0.8 43,000 - GFF1850 0.71 +0.6 43,054 + GFF1850 0.77 +0.4 43,065 - GFF1850 0.79 +0.1 43,102 + GFF1850 0.83 -0.2 43,103 - GFF1850 0.83 +0.4 43,105 + GFF1850 0.84 +0.0 43,147 - GFF1850 0.89 +0.5 43,148 + GFF1850 0.89 +0.0 43,148 + GFF1850 0.89 +1.1 43,149 - GFF1850 0.89 -0.2 43,418 - GFF1851 0.12 -0.5 43,485 - GFF1851 0.17 +0.5 43,508 + GFF1851 0.19 +0.0 43,669 + GFF1851 0.32 -0.2 43,739 - GFF1851 0.37 -0.4 43,791 - GFF1851 0.41 +2.1 43,813 - GFF1851 0.43 -0.8 43,816 + GFF1851 0.43 +1.0 43,906 + GFF1851 0.50 +0.4 44,115 + GFF1851 0.66 -0.1 44,116 - GFF1851 0.66 -1.3 44,169 - GFF1851 0.70 +0.2 44,169 - GFF1851 0.70 +0.4 44,225 + GFF1851 0.75 -0.1
Or see this region's nucleotide sequence