Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1846 and GFF1847 overlap by 4 nucleotides GFF1847 and GFF1848 are separated by 425 nucleotides
GFF1846 - Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3), at 38,247 to 39,506
GFF1846
GFF1847 - Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3), at 39,503 to 40,693
GFF1847
GFF1848 - FIG074102: hypothetical protein, at 41,119 to 42,141
GFF1848
Position (kb) 39
40
41 Strain fitness (log2 ratio) -1
0
1
2 at 38.531 kb on + strand, within GFF1846 at 38.619 kb on - strand, within GFF1846 at 38.779 kb on + strand, within GFF1846 at 38.860 kb on - strand, within GFF1846 at 38.878 kb on + strand, within GFF1846 at 39.170 kb on - strand, within GFF1846 at 39.279 kb on + strand, within GFF1846 at 39.382 kb on - strand at 39.388 kb on + strand at 39.389 kb on - strand at 39.389 kb on - strand at 39.418 kb on + strand at 39.418 kb on + strand at 39.418 kb on + strand at 39.419 kb on - strand at 39.531 kb on + strand at 39.674 kb on - strand, within GFF1847 at 39.724 kb on + strand, within GFF1847 at 40.135 kb on + strand, within GFF1847 at 40.204 kb on + strand, within GFF1847 at 40.234 kb on + strand, within GFF1847 at 40.235 kb on - strand, within GFF1847 at 40.301 kb on - strand, within GFF1847 at 40.385 kb on + strand, within GFF1847 at 40.385 kb on + strand, within GFF1847 at 40.385 kb on + strand, within GFF1847 at 40.391 kb on - strand, within GFF1847 at 40.473 kb on + strand, within GFF1847 at 40.639 kb on + strand at 40.695 kb on + strand at 40.763 kb on - strand at 40.772 kb on - strand at 40.772 kb on - strand at 40.812 kb on + strand at 40.848 kb on - strand at 40.906 kb on + strand at 40.916 kb on + strand at 41.174 kb on + strand at 41.562 kb on - strand, within GFF1848
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 38,531 + GFF1846 0.23 +0.3 38,619 - GFF1846 0.30 +1.5 38,779 + GFF1846 0.42 -0.3 38,860 - GFF1846 0.49 -0.4 38,878 + GFF1846 0.50 +0.3 39,170 - GFF1846 0.73 +0.3 39,279 + GFF1846 0.82 +2.6 39,382 - -0.6 39,388 + +0.5 39,389 - -0.5 39,389 - +0.4 39,418 + -0.3 39,418 + -0.4 39,418 + +0.6 39,419 - +0.0 39,531 + +0.5 39,674 - GFF1847 0.14 +0.0 39,724 + GFF1847 0.19 +0.6 40,135 + GFF1847 0.53 -0.1 40,204 + GFF1847 0.59 +1.6 40,234 + GFF1847 0.61 -0.6 40,235 - GFF1847 0.61 -0.1 40,301 - GFF1847 0.67 +0.3 40,385 + GFF1847 0.74 +0.1 40,385 + GFF1847 0.74 -1.4 40,385 + GFF1847 0.74 +0.1 40,391 - GFF1847 0.75 -0.2 40,473 + GFF1847 0.81 -0.1 40,639 + -0.0 40,695 + +0.1 40,763 - -0.4 40,772 - -1.0 40,772 - +0.5 40,812 + +0.4 40,848 - -0.1 40,906 + -0.2 40,916 + +0.1 41,174 + -0.5 41,562 - GFF1848 0.43 -1.2
Or see this region's nucleotide sequence