Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF183 and GFF184 are separated by 11 nucleotides GFF184 and GFF185 are separated by 94 nucleotides GFF185 and GFF186 are separated by 82 nucleotides
GFF183 - RNA polymerase associated protein RapA (EC 3.6.1.-), at 176,182 to 179,088
GFF183
GFF184 - Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70), at 179,100 to 179,759
GFF184
GFF185 - DnaJ-like protein DjlA, at 179,854 to 180,666
GFF185
GFF186 - FIG01045743: hypothetical protein, at 180,749 to 180,910
GFF186
Position (kb) 179
180 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.109 kb on - strand, within GFF183 at 178.138 kb on + strand, within GFF183 at 178.461 kb on + strand, within GFF183 at 178.513 kb on - strand, within GFF183 at 178.707 kb on + strand, within GFF183 at 178.707 kb on + strand, within GFF183 at 178.707 kb on + strand, within GFF183 at 178.708 kb on - strand, within GFF183 at 178.708 kb on - strand, within GFF183 at 178.708 kb on - strand, within GFF183 at 178.708 kb on - strand, within GFF183 at 178.708 kb on - strand, within GFF183 at 179.068 kb on - strand at 179.168 kb on + strand, within GFF184 at 179.237 kb on + strand, within GFF184 at 179.386 kb on - strand, within GFF184 at 179.386 kb on - strand, within GFF184 at 179.437 kb on + strand, within GFF184 at 179.516 kb on + strand, within GFF184 at 179.600 kb on + strand, within GFF184 at 179.600 kb on + strand, within GFF184 at 179.600 kb on + strand, within GFF184 at 179.641 kb on - strand, within GFF184 at 179.881 kb on + strand at 180.203 kb on + strand, within GFF185 at 180.204 kb on - strand, within GFF185 at 180.222 kb on + strand, within GFF185 at 180.223 kb on - strand, within GFF185 at 180.230 kb on - strand, within GFF185 at 180.334 kb on + strand, within GFF185 at 180.342 kb on - strand, within GFF185 at 180.345 kb on + strand, within GFF185 at 180.346 kb on - strand, within GFF185 at 180.473 kb on - strand, within GFF185 at 180.473 kb on - strand, within GFF185 at 180.574 kb on - strand, within GFF185 at 180.667 kb on - strand at 180.667 kb on - strand at 180.714 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 178,109 - GFF183 0.66 +0.0 178,138 + GFF183 0.67 -0.5 178,461 + GFF183 0.78 -0.5 178,513 - GFF183 0.80 -1.2 178,707 + GFF183 0.87 -1.8 178,707 + GFF183 0.87 -0.2 178,707 + GFF183 0.87 -0.6 178,708 - GFF183 0.87 -0.7 178,708 - GFF183 0.87 +0.0 178,708 - GFF183 0.87 -0.1 178,708 - GFF183 0.87 -0.5 178,708 - GFF183 0.87 +0.1 179,068 - -1.4 179,168 + GFF184 0.10 +0.0 179,237 + GFF184 0.21 -0.6 179,386 - GFF184 0.43 -0.9 179,386 - GFF184 0.43 -0.6 179,437 + GFF184 0.51 +0.0 179,516 + GFF184 0.63 -0.4 179,600 + GFF184 0.76 +0.5 179,600 + GFF184 0.76 -0.8 179,600 + GFF184 0.76 +0.0 179,641 - GFF184 0.82 -0.6 179,881 + +0.4 180,203 + GFF185 0.43 -0.4 180,204 - GFF185 0.43 -1.7 180,222 + GFF185 0.45 +2.1 180,223 - GFF185 0.45 +0.2 180,230 - GFF185 0.46 +0.6 180,334 + GFF185 0.59 -0.4 180,342 - GFF185 0.60 +0.1 180,345 + GFF185 0.60 +0.1 180,346 - GFF185 0.61 -0.4 180,473 - GFF185 0.76 +0.1 180,473 - GFF185 0.76 -0.2 180,574 - GFF185 0.89 -0.8 180,667 - +1.3 180,667 - +0.4 180,714 + -0.2
Or see this region's nucleotide sequence