Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1806 and GFF1807 are separated by 167 nucleotides GFF1807 and GFF1808 are separated by 199 nucleotides
GFF1806 - Fumarate hydratase class II (EC 4.2.1.2), at 28,381 to 29,784
GFF1806
GFF1807 - Fumarate hydratase class I, aerobic (EC 4.2.1.2), at 29,952 to 31,598
GFF1807
GFF1808 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 31,798 to 32,973
GFF1808
Position (kb) 29
30
31
32 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 29.077 kb on - strand, within GFF1806 at 29.786 kb on - strand at 29.854 kb on - strand at 29.856 kb on + strand at 29.916 kb on + strand at 30.227 kb on + strand, within GFF1807 at 30.228 kb on - strand, within GFF1807 at 30.259 kb on + strand, within GFF1807 at 30.260 kb on - strand, within GFF1807 at 30.260 kb on - strand, within GFF1807 at 30.338 kb on - strand, within GFF1807 at 30.341 kb on - strand, within GFF1807 at 30.344 kb on + strand, within GFF1807 at 30.489 kb on + strand, within GFF1807 at 30.489 kb on + strand, within GFF1807 at 30.565 kb on + strand, within GFF1807 at 30.659 kb on + strand, within GFF1807 at 30.660 kb on - strand, within GFF1807 at 30.842 kb on - strand, within GFF1807 at 30.842 kb on - strand, within GFF1807 at 30.844 kb on + strand, within GFF1807 at 30.845 kb on - strand, within GFF1807 at 30.947 kb on + strand, within GFF1807 at 31.012 kb on + strand, within GFF1807 at 31.019 kb on - strand, within GFF1807 at 31.065 kb on - strand, within GFF1807 at 31.113 kb on - strand, within GFF1807 at 31.135 kb on + strand, within GFF1807 at 31.135 kb on + strand, within GFF1807 at 31.136 kb on - strand, within GFF1807 at 31.183 kb on + strand, within GFF1807 at 31.184 kb on - strand, within GFF1807 at 31.184 kb on - strand, within GFF1807 at 31.184 kb on - strand, within GFF1807 at 31.184 kb on - strand, within GFF1807 at 31.190 kb on + strand, within GFF1807 at 31.192 kb on + strand, within GFF1807 at 31.193 kb on - strand, within GFF1807 at 31.193 kb on - strand, within GFF1807 at 31.262 kb on + strand, within GFF1807 at 31.263 kb on - strand, within GFF1807 at 31.345 kb on + strand, within GFF1807 at 31.346 kb on - strand, within GFF1807 at 31.414 kb on - strand, within GFF1807 at 31.419 kb on - strand, within GFF1807 at 31.419 kb on - strand, within GFF1807 at 31.419 kb on - strand, within GFF1807 at 31.534 kb on + strand at 31.535 kb on - strand at 31.674 kb on + strand at 31.759 kb on + strand at 32.174 kb on - strand, within GFF1808 at 32.174 kb on - strand, within GFF1808 at 32.566 kb on + strand, within GFF1808
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 29,077 - GFF1806 0.50 +0.5 29,786 - +0.4 29,854 - -0.1 29,856 + +0.2 29,916 + -1.9 30,227 + GFF1807 0.17 -1.1 30,228 - GFF1807 0.17 -0.1 30,259 + GFF1807 0.19 -0.8 30,260 - GFF1807 0.19 -0.4 30,260 - GFF1807 0.19 -0.5 30,338 - GFF1807 0.23 -0.1 30,341 - GFF1807 0.24 -0.5 30,344 + GFF1807 0.24 -0.6 30,489 + GFF1807 0.33 -0.3 30,489 + GFF1807 0.33 -0.2 30,565 + GFF1807 0.37 -0.7 30,659 + GFF1807 0.43 -0.9 30,660 - GFF1807 0.43 +0.0 30,842 - GFF1807 0.54 -1.4 30,842 - GFF1807 0.54 -0.4 30,844 + GFF1807 0.54 +0.2 30,845 - GFF1807 0.54 -0.2 30,947 + GFF1807 0.60 -0.2 31,012 + GFF1807 0.64 +0.7 31,019 - GFF1807 0.65 +0.3 31,065 - GFF1807 0.68 +0.6 31,113 - GFF1807 0.70 -0.8 31,135 + GFF1807 0.72 +0.3 31,135 + GFF1807 0.72 -0.9 31,136 - GFF1807 0.72 +0.4 31,183 + GFF1807 0.75 -0.8 31,184 - GFF1807 0.75 +0.2 31,184 - GFF1807 0.75 -0.4 31,184 - GFF1807 0.75 +0.5 31,184 - GFF1807 0.75 -0.1 31,190 + GFF1807 0.75 +0.6 31,192 + GFF1807 0.75 -0.3 31,193 - GFF1807 0.75 -0.3 31,193 - GFF1807 0.75 +0.3 31,262 + GFF1807 0.80 +0.6 31,263 - GFF1807 0.80 +0.3 31,345 + GFF1807 0.85 -0.6 31,346 - GFF1807 0.85 -0.3 31,414 - GFF1807 0.89 -0.3 31,419 - GFF1807 0.89 -0.3 31,419 - GFF1807 0.89 +0.1 31,419 - GFF1807 0.89 -0.5 31,534 + -0.3 31,535 - +0.1 31,674 + -0.4 31,759 + -0.6 32,174 - GFF1808 0.32 -3.4 32,174 - GFF1808 0.32 -3.6 32,566 + GFF1808 0.65 -5.9
Or see this region's nucleotide sequence