Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1766

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1765 and GFF1766 are separated by 123 nucleotidesGFF1766 and GFF1767 are separated by 25 nucleotides GFF1765 - Galactonate dehydratase (EC 4.2.1.6), at 68,057 to 69,205 GFF1765 GFF1766 - D-galactonate transporter, at 69,329 to 70,627 GFF1766 GFF1767 - Sensor protein torS (EC 2.7.3.-), at 70,653 to 73,340 GFF1767 Position (kb) 69 70 71Strain fitness (log2 ratio) -1 0 1at 68.406 kb on - strand, within GFF1765at 68.406 kb on - strand, within GFF1765at 68.408 kb on - strand, within GFF1765at 68.678 kb on - strand, within GFF1765at 68.765 kb on - strand, within GFF1765at 68.765 kb on - strand, within GFF1765at 68.765 kb on - strand, within GFF1765at 68.861 kb on + strand, within GFF1765at 68.888 kb on + strand, within GFF1765at 68.888 kb on + strand, within GFF1765at 68.889 kb on - strand, within GFF1765at 69.005 kb on + strand, within GFF1765at 69.007 kb on + strand, within GFF1765at 69.007 kb on + strand, within GFF1765at 69.008 kb on - strand, within GFF1765at 69.105 kb on + strandat 69.136 kb on + strandat 69.136 kb on + strandat 69.161 kb on - strandat 69.260 kb on + strandat 69.261 kb on - strandat 69.340 kb on + strandat 69.401 kb on - strandat 69.401 kb on - strandat 69.401 kb on - strandat 69.401 kb on - strandat 69.419 kb on + strandat 69.525 kb on - strand, within GFF1766at 69.525 kb on - strand, within GFF1766at 69.566 kb on - strand, within GFF1766at 69.622 kb on - strand, within GFF1766at 69.724 kb on + strand, within GFF1766at 69.768 kb on - strand, within GFF1766at 69.878 kb on - strand, within GFF1766at 69.934 kb on + strand, within GFF1766at 69.953 kb on + strand, within GFF1766at 69.953 kb on + strand, within GFF1766at 69.954 kb on - strand, within GFF1766at 70.054 kb on + strand, within GFF1766at 70.055 kb on - strand, within GFF1766at 70.096 kb on + strand, within GFF1766at 70.127 kb on - strand, within GFF1766at 70.186 kb on - strand, within GFF1766at 70.213 kb on - strand, within GFF1766at 70.288 kb on + strand, within GFF1766at 70.354 kb on + strand, within GFF1766at 70.402 kb on + strand, within GFF1766at 70.403 kb on - strand, within GFF1766at 70.403 kb on - strand, within GFF1766at 70.492 kb on + strand, within GFF1766at 70.554 kb on - strandat 70.554 kb on - strandat 70.654 kb on + strandat 70.655 kb on - strandat 70.712 kb on + strandat 70.718 kb on + strandat 70.719 kb on - strandat 70.722 kb on - strandat 70.725 kb on + strandat 70.725 kb on + strandat 70.827 kb on - strandat 71.093 kb on + strand, within GFF1767at 71.094 kb on - strand, within GFF1767at 71.307 kb on - strand, within GFF1767at 71.310 kb on - strand, within GFF1767at 71.310 kb on - strand, within GFF1767at 71.310 kb on - strand, within GFF1767at 71.325 kb on - strand, within GFF1767at 71.328 kb on - strand, within GFF1767at 71.388 kb on - strand, within GFF1767at 71.585 kb on + strand, within GFF1767at 71.613 kb on - strand, within GFF1767

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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68,406 - GFF1765 0.30 -0.2
68,406 - GFF1765 0.30 -0.3
68,408 - GFF1765 0.31 -0.2
68,678 - GFF1765 0.54 +0.6
68,765 - GFF1765 0.62 -0.3
68,765 - GFF1765 0.62 -0.2
68,765 - GFF1765 0.62 -0.2
68,861 + GFF1765 0.70 -0.3
68,888 + GFF1765 0.72 -0.9
68,888 + GFF1765 0.72 -0.3
68,889 - GFF1765 0.72 -0.6
69,005 + GFF1765 0.83 -0.2
69,007 + GFF1765 0.83 +0.0
69,007 + GFF1765 0.83 -0.1
69,008 - GFF1765 0.83 +0.2
69,105 + +0.3
69,136 + -0.5
69,136 + +0.3
69,161 - -0.2
69,260 + -0.3
69,261 - +0.1
69,340 + +0.1
69,401 - -0.4
69,401 - -0.1
69,401 - -0.1
69,401 - +0.8
69,419 + +0.1
69,525 - GFF1766 0.15 -0.1
69,525 - GFF1766 0.15 +0.0
69,566 - GFF1766 0.18 +0.1
69,622 - GFF1766 0.23 +0.4
69,724 + GFF1766 0.30 -0.4
69,768 - GFF1766 0.34 +0.2
69,878 - GFF1766 0.42 -0.2
69,934 + GFF1766 0.47 -0.3
69,953 + GFF1766 0.48 +0.2
69,953 + GFF1766 0.48 +0.2
69,954 - GFF1766 0.48 +0.3
70,054 + GFF1766 0.56 +0.5
70,055 - GFF1766 0.56 -0.1
70,096 + GFF1766 0.59 +0.3
70,127 - GFF1766 0.61 -0.9
70,186 - GFF1766 0.66 -0.5
70,213 - GFF1766 0.68 +0.5
70,288 + GFF1766 0.74 +0.1
70,354 + GFF1766 0.79 +0.9
70,402 + GFF1766 0.83 +0.2
70,403 - GFF1766 0.83 +0.3
70,403 - GFF1766 0.83 +0.0
70,492 + GFF1766 0.90 +0.5
70,554 - -0.1
70,554 - -0.1
70,654 + +0.1
70,655 - +0.6
70,712 + -0.7
70,718 + -0.1
70,719 - -1.4
70,722 - -1.0
70,725 + -0.1
70,725 + -0.1
70,827 - +0.0
71,093 + GFF1767 0.16 -0.7
71,094 - GFF1767 0.16 -1.2
71,307 - GFF1767 0.24 -0.1
71,310 - GFF1767 0.24 +0.6
71,310 - GFF1767 0.24 +0.1
71,310 - GFF1767 0.24 -0.3
71,325 - GFF1767 0.25 +0.5
71,328 - GFF1767 0.25 +0.4
71,388 - GFF1767 0.27 +0.2
71,585 + GFF1767 0.35 +0.2
71,613 - GFF1767 0.36 +0.3

Or see this region's nucleotide sequence