Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1740 and GFF1741 are separated by 44 nucleotides GFF1741 and GFF1742 overlap by 1 nucleotides GFF1742 and GFF1743 are separated by 157 nucleotides
GFF1740 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 40,768 to 42,105
GFF1740
GFF1741 - FIG00553873: hypothetical protein, at 42,150 to 42,734
GFF1741
GFF1742 - FIG004212: hypothetical protein, at 42,734 to 43,489
GFF1742
GFF1743 - Putative LysR-family transcriptional regulator YidZ, at 43,647 to 44,606
GFF1743
Position (kb) 42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.151 kb on + strand, within GFF1740 at 41.438 kb on + strand, within GFF1740 at 41.438 kb on + strand, within GFF1740 at 41.438 kb on + strand, within GFF1740 at 41.439 kb on - strand, within GFF1740 at 41.443 kb on + strand, within GFF1740 at 41.443 kb on + strand, within GFF1740 at 41.444 kb on - strand, within GFF1740 at 41.452 kb on - strand, within GFF1740 at 41.661 kb on + strand, within GFF1740 at 41.661 kb on + strand, within GFF1740 at 41.662 kb on - strand, within GFF1740 at 41.662 kb on - strand, within GFF1740 at 41.713 kb on + strand, within GFF1740 at 41.715 kb on + strand, within GFF1740 at 41.796 kb on + strand, within GFF1740 at 41.797 kb on - strand, within GFF1740 at 41.833 kb on + strand, within GFF1740 at 41.895 kb on - strand, within GFF1740 at 41.999 kb on - strand at 42.068 kb on + strand at 42.143 kb on - strand at 42.464 kb on - strand, within GFF1741 at 42.468 kb on - strand, within GFF1741 at 42.469 kb on + strand, within GFF1741 at 42.470 kb on - strand, within GFF1741 at 42.528 kb on + strand, within GFF1741 at 42.582 kb on - strand, within GFF1741 at 42.693 kb on - strand at 42.716 kb on + strand at 42.717 kb on - strand at 42.717 kb on - strand at 42.717 kb on - strand at 42.736 kb on - strand at 42.754 kb on - strand at 42.908 kb on + strand, within GFF1742 at 43.035 kb on - strand, within GFF1742 at 43.103 kb on + strand, within GFF1742 at 43.176 kb on - strand, within GFF1742 at 43.239 kb on + strand, within GFF1742 at 43.240 kb on - strand, within GFF1742 at 43.240 kb on - strand, within GFF1742 at 43.330 kb on - strand, within GFF1742 at 43.330 kb on - strand, within GFF1742 at 43.336 kb on + strand, within GFF1742 at 43.459 kb on + strand at 43.460 kb on - strand at 43.460 kb on - strand at 43.531 kb on - strand at 43.615 kb on + strand at 43.686 kb on + strand at 43.687 kb on - strand at 43.706 kb on + strand at 43.715 kb on + strand at 43.716 kb on - strand at 43.728 kb on + strand at 43.731 kb on + strand at 43.731 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 41,151 + GFF1740 0.29 +1.8 41,438 + GFF1740 0.50 -0.1 41,438 + GFF1740 0.50 +0.7 41,438 + GFF1740 0.50 -0.4 41,439 - GFF1740 0.50 -0.3 41,443 + GFF1740 0.50 -0.3 41,443 + GFF1740 0.50 -0.3 41,444 - GFF1740 0.51 -0.4 41,452 - GFF1740 0.51 +0.7 41,661 + GFF1740 0.67 +0.2 41,661 + GFF1740 0.67 +0.7 41,662 - GFF1740 0.67 +0.4 41,662 - GFF1740 0.67 +0.4 41,713 + GFF1740 0.71 -0.1 41,715 + GFF1740 0.71 +0.0 41,796 + GFF1740 0.77 +0.0 41,797 - GFF1740 0.77 +0.2 41,833 + GFF1740 0.80 -0.2 41,895 - GFF1740 0.84 +0.2 41,999 - -0.2 42,068 + -0.2 42,143 - -0.4 42,464 - GFF1741 0.54 +0.1 42,468 - GFF1741 0.54 -0.9 42,469 + GFF1741 0.55 -0.3 42,470 - GFF1741 0.55 +0.2 42,528 + GFF1741 0.65 +0.2 42,582 - GFF1741 0.74 +0.2 42,693 - -0.1 42,716 + -0.1 42,717 - +0.0 42,717 - +0.5 42,717 - +0.4 42,736 - -0.2 42,754 - -0.7 42,908 + GFF1742 0.23 -0.3 43,035 - GFF1742 0.40 +0.0 43,103 + GFF1742 0.49 -0.9 43,176 - GFF1742 0.58 -0.7 43,239 + GFF1742 0.67 -0.5 43,240 - GFF1742 0.67 -0.3 43,240 - GFF1742 0.67 -1.7 43,330 - GFF1742 0.79 +0.3 43,330 - GFF1742 0.79 +1.7 43,336 + GFF1742 0.80 -0.0 43,459 + -0.1 43,460 - -0.6 43,460 - -0.7 43,531 - +0.1 43,615 + +0.1 43,686 + -2.1 43,687 - -0.1 43,706 + -1.1 43,715 + +0.3 43,716 - -0.1 43,728 + -0.1 43,731 + -0.8 43,731 + +0.0
Or see this region's nucleotide sequence