Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1735 and GFF1736 overlap by 1 nucleotides GFF1736 and GFF1737 are separated by 50 nucleotides GFF1737 and GFF1738 are separated by 14 nucleotides
GFF1735 - Phosphate transport system permease protein PstC (TC 3.A.1.7.1), at 36,390 to 37,349
GFF1735
GFF1736 - Phosphate transport system permease protein PstA (TC 3.A.1.7.1), at 37,349 to 38,239
GFF1736
GFF1737 - Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1), at 38,290 to 39,099
GFF1737
GFF1738 - Phosphate transport system regulatory protein PhoU, at 39,114 to 39,839
GFF1738
Position (kb) 37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 36.481 kb on + strand at 36.566 kb on + strand, within GFF1735 at 36.594 kb on + strand, within GFF1735 at 36.788 kb on + strand, within GFF1735 at 36.939 kb on + strand, within GFF1735 at 36.939 kb on + strand, within GFF1735 at 36.939 kb on + strand, within GFF1735 at 37.016 kb on + strand, within GFF1735 at 37.019 kb on + strand, within GFF1735 at 37.082 kb on + strand, within GFF1735 at 37.146 kb on + strand, within GFF1735 at 37.146 kb on + strand, within GFF1735 at 37.170 kb on + strand, within GFF1735 at 37.170 kb on + strand, within GFF1735 at 37.316 kb on + strand at 37.632 kb on + strand, within GFF1736 at 37.667 kb on + strand, within GFF1736 at 38.184 kb on + strand at 38.248 kb on + strand at 38.248 kb on + strand at 38.257 kb on + strand at 38.380 kb on + strand, within GFF1737 at 38.380 kb on + strand, within GFF1737 at 38.559 kb on + strand, within GFF1737 at 38.647 kb on + strand, within GFF1737 at 38.997 kb on + strand, within GFF1737 at 39.001 kb on + strand, within GFF1737
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 36,481 + -3.7 36,566 + GFF1735 0.18 -1.6 36,594 + GFF1735 0.21 +0.4 36,788 + GFF1735 0.41 -1.6 36,939 + GFF1735 0.57 -1.6 36,939 + GFF1735 0.57 -1.2 36,939 + GFF1735 0.57 -2.4 37,016 + GFF1735 0.65 -0.4 37,019 + GFF1735 0.66 +0.2 37,082 + GFF1735 0.72 -0.3 37,146 + GFF1735 0.79 +0.1 37,146 + GFF1735 0.79 +0.4 37,170 + GFF1735 0.81 -0.4 37,170 + GFF1735 0.81 -0.9 37,316 + +0.2 37,632 + GFF1736 0.32 -0.4 37,667 + GFF1736 0.36 -1.1 38,184 + +0.1 38,248 + -0.6 38,248 + +0.1 38,257 + +0.3 38,380 + GFF1737 0.11 -2.3 38,380 + GFF1737 0.11 -2.0 38,559 + GFF1737 0.33 -1.6 38,647 + GFF1737 0.44 -3.5 38,997 + GFF1737 0.87 -0.6 39,001 + GFF1737 0.88 -2.1
Or see this region's nucleotide sequence