Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1696 and GFF1697 are separated by 66 nucleotides GFF1697 and GFF1698 overlap by 4 nucleotides GFF1698 and GFF1699 are separated by 311 nucleotides GFF1699 and GFF1700 overlap by 4 nucleotides
GFF1696 - N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator @ N-3-oxooctanoyl-L-homoserine lactone quorum-sensing transcriptional activator, at 5,301 to 6,023
GFF1696
GFF1697 - FIG00634007: hypothetical protein, at 6,090 to 6,314
GFF1697
GFF1698 - FIG01045369: hypothetical protein, at 6,311 to 6,466
GFF1698
GFF1699 - BarA-associated response regulator UvrY (= GacA = SirA), at 6,778 to 7,434
GFF1699
GFF1700 - Excinuclease ABC subunit C, at 7,431 to 9,263
GFF1700
Position (kb) 6
7
8 Strain fitness (log2 ratio) -2
-1
0
1 at 6.186 kb on - strand, within GFF1697 at 6.652 kb on - strand at 6.652 kb on - strand at 6.742 kb on + strand at 6.847 kb on - strand, within GFF1699 at 6.913 kb on - strand, within GFF1699 at 7.147 kb on + strand, within GFF1699 at 7.311 kb on + strand, within GFF1699 at 7.422 kb on - strand at 7.496 kb on + strand at 7.497 kb on - strand at 7.501 kb on - strand at 7.680 kb on + strand, within GFF1700 at 7.704 kb on + strand, within GFF1700 at 7.728 kb on - strand, within GFF1700 at 7.742 kb on + strand, within GFF1700 at 7.829 kb on + strand, within GFF1700 at 7.903 kb on + strand, within GFF1700 at 8.010 kb on + strand, within GFF1700 at 8.010 kb on + strand, within GFF1700 at 8.033 kb on + strand, within GFF1700 at 8.114 kb on + strand, within GFF1700 at 8.381 kb on - strand, within GFF1700
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 6,186 - GFF1697 0.43 +0.0 6,652 - +0.1 6,652 - -0.4 6,742 + +0.1 6,847 - GFF1699 0.11 -0.4 6,913 - GFF1699 0.21 -0.7 7,147 + GFF1699 0.56 -1.9 7,311 + GFF1699 0.81 +1.1 7,422 - +0.6 7,496 + -0.1 7,497 - -0.7 7,501 - +0.0 7,680 + GFF1700 0.14 -0.7 7,704 + GFF1700 0.15 +0.6 7,728 - GFF1700 0.16 -0.4 7,742 + GFF1700 0.17 -0.2 7,829 + GFF1700 0.22 +0.0 7,903 + GFF1700 0.26 -0.8 8,010 + GFF1700 0.32 -0.1 8,010 + GFF1700 0.32 +0.4 8,033 + GFF1700 0.33 +0.3 8,114 + GFF1700 0.37 -0.1 8,381 - GFF1700 0.52 -0.5
Or see this region's nucleotide sequence