Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1693 and GFF1694 are separated by 20 nucleotides GFF1694 and GFF1695 overlap by 4 nucleotides GFF1695 and GFF1696 are separated by 231 nucleotides
GFF1693 - D-cysteine desulfhydrase (EC 4.4.1.15), at 2,645 to 3,631
GFF1693
GFF1694 - Cystine ABC transporter, permease protein, at 3,652 to 4,320
GFF1694
GFF1695 - Cystine ABC transporter, ATP-binding protein, at 4,317 to 5,069
GFF1695
GFF1696 - N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator @ N-3-oxooctanoyl-L-homoserine lactone quorum-sensing transcriptional activator, at 5,301 to 6,023
GFF1696
Position (kb) 3
4
5 Strain fitness (log2 ratio) -2
-1
0
1 at 2.652 kb on + strand at 2.750 kb on + strand, within GFF1693 at 3.104 kb on + strand, within GFF1693 at 3.153 kb on + strand, within GFF1693 at 3.249 kb on + strand, within GFF1693 at 3.355 kb on + strand, within GFF1693 at 3.400 kb on - strand, within GFF1693 at 3.411 kb on - strand, within GFF1693 at 3.628 kb on - strand at 3.628 kb on - strand at 3.628 kb on - strand at 3.823 kb on + strand, within GFF1694 at 3.823 kb on + strand, within GFF1694 at 3.824 kb on - strand, within GFF1694 at 3.874 kb on + strand, within GFF1694 at 3.878 kb on - strand, within GFF1694 at 4.110 kb on + strand, within GFF1694 at 4.128 kb on + strand, within GFF1694 at 4.128 kb on + strand, within GFF1694 at 4.181 kb on + strand, within GFF1694 at 4.182 kb on - strand, within GFF1694 at 4.209 kb on + strand, within GFF1694 at 4.453 kb on + strand, within GFF1695 at 4.454 kb on - strand, within GFF1695 at 4.497 kb on - strand, within GFF1695 at 4.959 kb on + strand, within GFF1695 at 5.202 kb on - strand at 5.225 kb on - strand at 5.225 kb on - strand at 5.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 2,652 + -0.2 2,750 + GFF1693 0.11 -0.1 3,104 + GFF1693 0.47 -0.3 3,153 + GFF1693 0.51 +0.8 3,249 + GFF1693 0.61 -0.2 3,355 + GFF1693 0.72 -0.9 3,400 - GFF1693 0.76 +0.5 3,411 - GFF1693 0.78 +0.5 3,628 - +0.8 3,628 - +0.2 3,628 - +1.0 3,823 + GFF1694 0.26 -0.3 3,823 + GFF1694 0.26 -0.3 3,824 - GFF1694 0.26 -0.1 3,874 + GFF1694 0.33 -0.3 3,878 - GFF1694 0.34 +0.5 4,110 + GFF1694 0.68 -0.2 4,128 + GFF1694 0.71 +0.1 4,128 + GFF1694 0.71 -1.0 4,181 + GFF1694 0.79 +0.0 4,182 - GFF1694 0.79 -0.0 4,209 + GFF1694 0.83 -2.0 4,453 + GFF1695 0.18 +0.0 4,454 - GFF1695 0.18 -0.8 4,497 - GFF1695 0.24 -0.2 4,959 + GFF1695 0.85 +0.3 5,202 - -0.9 5,225 - -0.1 5,225 - +0.2 5,227 - -0.2
Or see this region's nucleotide sequence