Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1671 and GFF1672 are separated by 124 nucleotides GFF1672 and GFF1673 are separated by 2 nucleotides GFF1673 and GFF1674 are separated by 795 nucleotides
GFF1671 - Flagellar motor rotation protein MotA, at 56,545 to 57,432
GFF1671
GFF1672 - Flagellar transcriptional activator FlhC, at 57,557 to 58,135
GFF1672
GFF1673 - Flagellar transcriptional activator FlhD, at 58,138 to 58,479
GFF1673
GFF1674 - Universal stress protein C, at 59,275 to 59,703
GFF1674
Position (kb) 58
59 Strain fitness (log2 ratio) -1
0
1 at 57.210 kb on - strand, within GFF1671 at 57.210 kb on - strand, within GFF1671 at 57.213 kb on + strand, within GFF1671 at 57.214 kb on - strand, within GFF1671 at 57.347 kb on + strand at 57.426 kb on + strand at 57.427 kb on - strand at 57.457 kb on - strand at 57.635 kb on + strand, within GFF1672 at 57.635 kb on + strand, within GFF1672 at 57.725 kb on - strand, within GFF1672 at 57.831 kb on + strand, within GFF1672 at 57.944 kb on - strand, within GFF1672 at 58.136 kb on + strand at 58.136 kb on + strand at 58.200 kb on + strand, within GFF1673 at 58.219 kb on + strand, within GFF1673 at 58.448 kb on + strand at 58.460 kb on - strand at 58.460 kb on - strand at 58.473 kb on + strand at 58.614 kb on + strand at 58.615 kb on - strand at 58.645 kb on - strand at 58.722 kb on + strand at 58.723 kb on - strand at 58.723 kb on - strand at 58.815 kb on - strand at 59.281 kb on + strand at 59.282 kb on - strand at 59.385 kb on + strand, within GFF1674 at 59.410 kb on + strand, within GFF1674 at 59.411 kb on - strand, within GFF1674
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 57,210 - GFF1671 0.75 +0.5 57,210 - GFF1671 0.75 +0.3 57,213 + GFF1671 0.75 +0.4 57,214 - GFF1671 0.75 +0.9 57,347 + +0.4 57,426 + -0.1 57,427 - +0.7 57,457 - +0.4 57,635 + GFF1672 0.13 +0.3 57,635 + GFF1672 0.13 +0.4 57,725 - GFF1672 0.29 +0.6 57,831 + GFF1672 0.47 -0.0 57,944 - GFF1672 0.67 -0.1 58,136 + +0.5 58,136 + +0.3 58,200 + GFF1673 0.18 +1.1 58,219 + GFF1673 0.24 +0.2 58,448 + +0.8 58,460 - +0.2 58,460 - +0.3 58,473 + +0.5 58,614 + -0.3 58,615 - +0.3 58,645 - +0.5 58,722 + +0.4 58,723 - +0.4 58,723 - +0.6 58,815 - +0.0 59,281 + -0.5 59,282 - +0.1 59,385 + GFF1674 0.26 +0.2 59,410 + GFF1674 0.31 +0.9 59,411 - GFF1674 0.32 +0.8
Or see this region's nucleotide sequence