Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1636 and GFF1637 are separated by 78 nucleotides GFF1637 and GFF1638 overlap by 4 nucleotides GFF1638 and GFF1639 are separated by 78 nucleotides
GFF1636 - Zinc ABC transporter, periplasmic-binding protein ZnuA, at 22,836 to 23,780
GFF1636
GFF1637 - Zinc ABC transporter, ATP-binding protein ZnuC, at 23,859 to 24,614
GFF1637
GFF1638 - Zinc ABC transporter, inner membrane permease protein ZnuB, at 24,611 to 25,396
GFF1638
GFF1639 - Holliday junction DNA helicase RuvB, at 25,475 to 26,485
GFF1639
Position (kb) 24
25
26 Strain fitness (log2 ratio) -1
0
1 at 23.790 kb on - strand at 23.999 kb on - strand, within GFF1637 at 24.069 kb on + strand, within GFF1637 at 24.070 kb on - strand, within GFF1637 at 24.087 kb on + strand, within GFF1637 at 24.133 kb on + strand, within GFF1637 at 24.336 kb on + strand, within GFF1637 at 24.400 kb on + strand, within GFF1637 at 24.449 kb on + strand, within GFF1637 at 24.449 kb on + strand, within GFF1637 at 24.450 kb on - strand, within GFF1637 at 24.450 kb on - strand, within GFF1637 at 24.503 kb on + strand, within GFF1637 at 24.826 kb on - strand, within GFF1638 at 24.875 kb on - strand, within GFF1638 at 24.891 kb on + strand, within GFF1638 at 24.950 kb on + strand, within GFF1638 at 24.950 kb on + strand, within GFF1638 at 24.992 kb on - strand, within GFF1638 at 25.003 kb on + strand, within GFF1638 at 25.016 kb on - strand, within GFF1638 at 25.066 kb on + strand, within GFF1638 at 25.122 kb on + strand, within GFF1638 at 25.148 kb on - strand, within GFF1638 at 25.273 kb on + strand, within GFF1638 at 25.273 kb on + strand, within GFF1638 at 25.274 kb on - strand, within GFF1638 at 25.314 kb on - strand, within GFF1638 at 25.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 23,790 - -0.1 23,999 - GFF1637 0.19 -0.2 24,069 + GFF1637 0.28 +0.3 24,070 - GFF1637 0.28 -0.1 24,087 + GFF1637 0.30 -0.1 24,133 + GFF1637 0.36 -0.5 24,336 + GFF1637 0.63 +0.0 24,400 + GFF1637 0.72 +0.1 24,449 + GFF1637 0.78 -0.2 24,449 + GFF1637 0.78 -1.0 24,450 - GFF1637 0.78 -0.2 24,450 - GFF1637 0.78 -0.1 24,503 + GFF1637 0.85 +0.1 24,826 - GFF1638 0.27 +0.4 24,875 - GFF1638 0.34 -0.7 24,891 + GFF1638 0.36 -0.0 24,950 + GFF1638 0.43 +0.7 24,950 + GFF1638 0.43 +0.2 24,992 - GFF1638 0.48 -0.4 25,003 + GFF1638 0.50 -0.2 25,016 - GFF1638 0.52 -0.2 25,066 + GFF1638 0.58 -0.6 25,122 + GFF1638 0.65 +0.6 25,148 - GFF1638 0.68 -0.2 25,273 + GFF1638 0.84 +0.0 25,273 + GFF1638 0.84 -0.6 25,274 - GFF1638 0.84 -0.3 25,314 - GFF1638 0.89 -0.7 25,373 - +0.8
Or see this region's nucleotide sequence