Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1594 and GFF1595 are separated by 144 nucleotides GFF1595 and GFF1596 are separated by 57 nucleotides GFF1596 and GFF1597 are separated by 149 nucleotides
GFF1594 - Putative glycoporin, at 52,736 to 54,106
GFF1594
GFF1595 - hypothetical protein, at 54,251 to 54,394
GFF1595
GFF1596 - S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS, at 54,452 to 54,967
GFF1596
GFF1597 - Glutamate--cysteine ligase (EC 6.3.2.2), at 55,117 to 56,673
GFF1597
Position (kb) 54
55 Strain fitness (log2 ratio) -1
0
1 at 53.452 kb on - strand, within GFF1594 at 53.452 kb on - strand, within GFF1594 at 53.452 kb on - strand, within GFF1594 at 53.452 kb on - strand, within GFF1594 at 53.456 kb on - strand, within GFF1594 at 53.457 kb on + strand, within GFF1594 at 53.812 kb on + strand, within GFF1594 at 53.992 kb on + strand at 54.532 kb on + strand, within GFF1596 at 54.576 kb on + strand, within GFF1596 at 54.705 kb on + strand, within GFF1596 at 54.706 kb on - strand, within GFF1596 at 54.806 kb on - strand, within GFF1596 at 54.953 kb on - strand at 54.953 kb on - strand at 54.953 kb on - strand at 54.957 kb on - strand at 54.957 kb on - strand at 54.983 kb on - strand at 55.186 kb on + strand at 55.312 kb on - strand, within GFF1597 at 55.318 kb on + strand, within GFF1597 at 55.518 kb on + strand, within GFF1597 at 55.518 kb on + strand, within GFF1597 at 55.558 kb on - strand, within GFF1597 at 55.561 kb on + strand, within GFF1597 at 55.561 kb on + strand, within GFF1597 at 55.561 kb on + strand, within GFF1597 at 55.561 kb on + strand, within GFF1597 at 55.562 kb on - strand, within GFF1597 at 55.562 kb on - strand, within GFF1597 at 55.601 kb on - strand, within GFF1597 at 55.671 kb on + strand, within GFF1597 at 55.697 kb on + strand, within GFF1597 at 55.873 kb on - strand, within GFF1597 at 55.898 kb on + strand, within GFF1597 at 55.915 kb on - strand, within GFF1597 at 55.953 kb on - strand, within GFF1597
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 53,452 - GFF1594 0.52 -0.3 53,452 - GFF1594 0.52 +0.2 53,452 - GFF1594 0.52 +1.6 53,452 - GFF1594 0.52 +1.3 53,456 - GFF1594 0.53 -0.3 53,457 + GFF1594 0.53 +0.2 53,812 + GFF1594 0.78 +0.1 53,992 + +0.1 54,532 + GFF1596 0.16 -0.0 54,576 + GFF1596 0.24 -0.5 54,705 + GFF1596 0.49 +0.1 54,706 - GFF1596 0.49 +0.1 54,806 - GFF1596 0.69 -0.5 54,953 - +0.2 54,953 - -0.3 54,953 - +0.2 54,957 - +0.3 54,957 - +0.4 54,983 - -0.2 55,186 + +0.6 55,312 - GFF1597 0.13 -0.7 55,318 + GFF1597 0.13 -0.1 55,518 + GFF1597 0.26 +0.4 55,518 + GFF1597 0.26 -0.0 55,558 - GFF1597 0.28 +0.3 55,561 + GFF1597 0.29 -0.1 55,561 + GFF1597 0.29 -0.3 55,561 + GFF1597 0.29 -0.7 55,561 + GFF1597 0.29 -1.7 55,562 - GFF1597 0.29 +0.1 55,562 - GFF1597 0.29 -0.3 55,601 - GFF1597 0.31 -0.2 55,671 + GFF1597 0.36 +0.4 55,697 + GFF1597 0.37 -0.5 55,873 - GFF1597 0.49 -0.2 55,898 + GFF1597 0.50 -0.6 55,915 - GFF1597 0.51 +0.5 55,953 - GFF1597 0.54 +0.2
Or see this region's nucleotide sequence