Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1552 and GFF1553 are separated by 98 nucleotides GFF1553 and GFF1554 overlap by 4 nucleotides GFF1554 and GFF1555 are separated by 515 nucleotides GFF1555 and GFF1556 are separated by 92 nucleotides
GFF1552 - virulence protein, at 16,555 to 17,484
GFF1552
GFF1553 - FIG01046564: hypothetical protein, at 17,583 to 17,780
GFF1553
GFF1554 - Putative transcriptional regulator, at 17,777 to 18,673
GFF1554
GFF1555 - hypothetical protein, at 19,189 to 19,302
GFF1555
GFF1556 - HoxN/HupN/NixA family nickel/cobalt transporter, at 19,395 to 20,408
GFF1556
Position (kb) 17
18
19 Strain fitness (log2 ratio) -1
0
1 at 16.815 kb on + strand, within GFF1552 at 16.816 kb on - strand, within GFF1552 at 16.955 kb on + strand, within GFF1552 at 16.956 kb on - strand, within GFF1552 at 16.959 kb on + strand, within GFF1552 at 16.960 kb on - strand, within GFF1552 at 16.963 kb on + strand, within GFF1552 at 16.964 kb on - strand, within GFF1552 at 17.132 kb on + strand, within GFF1552 at 17.132 kb on + strand, within GFF1552 at 17.308 kb on + strand, within GFF1552 at 17.354 kb on + strand, within GFF1552 at 17.354 kb on + strand, within GFF1552 at 17.354 kb on + strand, within GFF1552 at 17.355 kb on - strand, within GFF1552 at 17.456 kb on + strand at 17.562 kb on + strand at 17.622 kb on + strand, within GFF1553 at 17.623 kb on - strand, within GFF1553 at 17.969 kb on + strand, within GFF1554 at 18.039 kb on + strand, within GFF1554 at 18.529 kb on - strand, within GFF1554 at 19.060 kb on - strand at 19.090 kb on + strand at 19.636 kb on + strand, within GFF1556 at 19.636 kb on + strand, within GFF1556 at 19.639 kb on + strand, within GFF1556 at 19.639 kb on + strand, within GFF1556 at 19.640 kb on - strand, within GFF1556 at 19.646 kb on + strand, within GFF1556 at 19.651 kb on - strand, within GFF1556
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 16,815 + GFF1552 0.28 +0.6 16,816 - GFF1552 0.28 -0.6 16,955 + GFF1552 0.43 +0.2 16,956 - GFF1552 0.43 +0.6 16,959 + GFF1552 0.43 +0.1 16,960 - GFF1552 0.44 +0.5 16,963 + GFF1552 0.44 +0.5 16,964 - GFF1552 0.44 -1.1 17,132 + GFF1552 0.62 -1.0 17,132 + GFF1552 0.62 -0.5 17,308 + GFF1552 0.81 -0.1 17,354 + GFF1552 0.86 -0.1 17,354 + GFF1552 0.86 +0.4 17,354 + GFF1552 0.86 +0.1 17,355 - GFF1552 0.86 -0.4 17,456 + +0.4 17,562 + -0.1 17,622 + GFF1553 0.20 -0.0 17,623 - GFF1553 0.20 +0.4 17,969 + GFF1554 0.21 +0.8 18,039 + GFF1554 0.29 +1.4 18,529 - GFF1554 0.84 +0.2 19,060 - +0.5 19,090 + -0.6 19,636 + GFF1556 0.24 -0.0 19,636 + GFF1556 0.24 +0.0 19,639 + GFF1556 0.24 -0.2 19,639 + GFF1556 0.24 -0.1 19,640 - GFF1556 0.24 +0.0 19,646 + GFF1556 0.25 +1.6 19,651 - GFF1556 0.25 +1.0
Or see this region's nucleotide sequence