Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1476 and GFF1477 are separated by 97 nucleotides GFF1477 and GFF1478 are separated by 95 nucleotides
GFF1476 - Melibiose carrier protein, Na+/melibiose symporter, at 143,968 to 145,398
GFF1476
GFF1477 - Fumarate hydratase class I, anaerobic (EC 4.2.1.2), at 145,496 to 147,142
GFF1477
GFF1478 - C4-dicarboxylate transporter DcuB, at 147,238 to 148,578
GFF1478
Position (kb) 145
146
147
148 Strain fitness (log2 ratio) -2
-1
0
1 at 144.513 kb on + strand, within GFF1476 at 144.521 kb on + strand, within GFF1476 at 144.569 kb on + strand, within GFF1476 at 144.569 kb on + strand, within GFF1476 at 144.570 kb on - strand, within GFF1476 at 144.570 kb on - strand, within GFF1476 at 144.570 kb on - strand, within GFF1476 at 144.600 kb on - strand, within GFF1476 at 144.712 kb on - strand, within GFF1476 at 144.737 kb on - strand, within GFF1476 at 144.746 kb on - strand, within GFF1476 at 144.746 kb on - strand, within GFF1476 at 144.778 kb on + strand, within GFF1476 at 145.051 kb on - strand, within GFF1476 at 145.072 kb on + strand, within GFF1476 at 145.204 kb on - strand, within GFF1476 at 145.207 kb on - strand, within GFF1476 at 145.262 kb on - strand at 145.315 kb on - strand at 145.319 kb on - strand at 145.606 kb on + strand at 145.651 kb on + strand at 145.652 kb on - strand at 145.702 kb on - strand, within GFF1477 at 145.772 kb on - strand, within GFF1477 at 145.803 kb on + strand, within GFF1477 at 145.804 kb on - strand, within GFF1477 at 145.804 kb on - strand, within GFF1477 at 145.804 kb on - strand, within GFF1477 at 145.836 kb on - strand, within GFF1477 at 145.900 kb on + strand, within GFF1477 at 145.900 kb on + strand, within GFF1477 at 145.903 kb on + strand, within GFF1477 at 145.904 kb on - strand, within GFF1477 at 145.905 kb on + strand, within GFF1477 at 146.107 kb on + strand, within GFF1477 at 146.109 kb on + strand, within GFF1477 at 146.110 kb on - strand, within GFF1477 at 146.110 kb on - strand, within GFF1477 at 146.243 kb on + strand, within GFF1477 at 146.386 kb on - strand, within GFF1477 at 146.464 kb on - strand, within GFF1477 at 146.557 kb on - strand, within GFF1477 at 146.557 kb on - strand, within GFF1477 at 146.562 kb on + strand, within GFF1477 at 146.610 kb on + strand, within GFF1477 at 146.679 kb on + strand, within GFF1477 at 146.679 kb on + strand, within GFF1477 at 146.683 kb on + strand, within GFF1477 at 146.684 kb on - strand, within GFF1477 at 146.727 kb on + strand, within GFF1477 at 146.727 kb on + strand, within GFF1477 at 146.728 kb on - strand, within GFF1477 at 146.728 kb on - strand, within GFF1477 at 146.731 kb on + strand, within GFF1477 at 146.732 kb on - strand, within GFF1477 at 146.889 kb on + strand, within GFF1477 at 146.889 kb on + strand, within GFF1477 at 147.028 kb on + strand at 147.079 kb on - strand at 147.081 kb on + strand at 147.158 kb on + strand at 147.408 kb on + strand, within GFF1478 at 147.410 kb on + strand, within GFF1478 at 147.410 kb on + strand, within GFF1478 at 147.410 kb on + strand, within GFF1478 at 147.411 kb on - strand, within GFF1478 at 147.411 kb on - strand, within GFF1478 at 147.411 kb on - strand, within GFF1478 at 147.414 kb on - strand, within GFF1478 at 147.414 kb on - strand, within GFF1478 at 147.805 kb on + strand, within GFF1478 at 147.806 kb on - strand, within GFF1478 at 147.926 kb on + strand, within GFF1478 at 148.002 kb on + strand, within GFF1478
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 144,513 + GFF1476 0.38 -0.2 144,521 + GFF1476 0.39 +1.6 144,569 + GFF1476 0.42 -0.5 144,569 + GFF1476 0.42 -0.3 144,570 - GFF1476 0.42 -0.2 144,570 - GFF1476 0.42 -0.6 144,570 - GFF1476 0.42 -1.0 144,600 - GFF1476 0.44 -0.1 144,712 - GFF1476 0.52 +0.1 144,737 - GFF1476 0.54 -1.9 144,746 - GFF1476 0.54 -0.9 144,746 - GFF1476 0.54 -0.1 144,778 + GFF1476 0.57 -0.9 145,051 - GFF1476 0.76 -0.1 145,072 + GFF1476 0.77 -0.1 145,204 - GFF1476 0.86 +0.2 145,207 - GFF1476 0.87 -0.2 145,262 - +0.1 145,315 - -0.3 145,319 - -0.4 145,606 + -0.3 145,651 + -0.4 145,652 - +0.2 145,702 - GFF1477 0.13 +0.2 145,772 - GFF1477 0.17 -0.6 145,803 + GFF1477 0.19 +0.4 145,804 - GFF1477 0.19 -1.0 145,804 - GFF1477 0.19 +0.6 145,804 - GFF1477 0.19 -0.1 145,836 - GFF1477 0.21 +1.0 145,900 + GFF1477 0.25 +0.0 145,900 + GFF1477 0.25 -0.1 145,903 + GFF1477 0.25 -0.4 145,904 - GFF1477 0.25 +0.2 145,905 + GFF1477 0.25 -0.3 146,107 + GFF1477 0.37 -1.2 146,109 + GFF1477 0.37 +1.0 146,110 - GFF1477 0.37 +1.4 146,110 - GFF1477 0.37 +0.5 146,243 + GFF1477 0.45 +1.7 146,386 - GFF1477 0.54 +0.3 146,464 - GFF1477 0.59 +0.4 146,557 - GFF1477 0.64 +0.2 146,557 - GFF1477 0.64 +0.3 146,562 + GFF1477 0.65 +1.1 146,610 + GFF1477 0.68 +0.2 146,679 + GFF1477 0.72 +0.2 146,679 + GFF1477 0.72 -0.2 146,683 + GFF1477 0.72 +0.2 146,684 - GFF1477 0.72 -0.1 146,727 + GFF1477 0.75 +0.1 146,727 + GFF1477 0.75 +0.0 146,728 - GFF1477 0.75 -0.5 146,728 - GFF1477 0.75 +0.3 146,731 + GFF1477 0.75 +0.2 146,732 - GFF1477 0.75 -0.1 146,889 + GFF1477 0.85 +0.1 146,889 + GFF1477 0.85 +0.1 147,028 + +0.3 147,079 - +0.3 147,081 + -0.5 147,158 + +0.3 147,408 + GFF1478 0.13 +0.4 147,410 + GFF1478 0.13 -0.3 147,410 + GFF1478 0.13 -0.2 147,410 + GFF1478 0.13 -0.0 147,411 - GFF1478 0.13 -0.1 147,411 - GFF1478 0.13 +1.6 147,411 - GFF1478 0.13 -0.7 147,414 - GFF1478 0.13 -0.4 147,414 - GFF1478 0.13 -0.2 147,805 + GFF1478 0.42 +0.2 147,806 - GFF1478 0.42 -0.6 147,926 + GFF1478 0.51 +0.4 148,002 + GFF1478 0.57 +0.1
Or see this region's nucleotide sequence