Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1377 and GFF1378 overlap by 4 nucleotides GFF1378 and GFF1379 are separated by 298 nucleotides GFF1379 and GFF1380 are separated by 8 nucleotides GFF1380 and GFF1381 are separated by 9 nucleotides
GFF1377 - Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-), at 26,121 to 27,050
GFF1377
GFF1378 - putative phage glucose translocase, at 27,047 to 27,304
GFF1378
GFF1379 - hypothetical protein, at 27,603 to 27,728
GFF1379
GFF1380 - Putative phage baseplate component, at 27,737 to 28,459
GFF1380
GFF1381 - Gene D protein, at 28,469 to 29,512
GFF1381
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1
2 at 26.943 kb on - strand, within GFF1377 at 27.143 kb on - strand, within GFF1378 at 27.201 kb on + strand, within GFF1378 at 27.210 kb on + strand, within GFF1378 at 27.224 kb on + strand, within GFF1378 at 27.226 kb on - strand, within GFF1378 at 27.388 kb on - strand at 27.399 kb on - strand at 27.536 kb on + strand at 27.540 kb on + strand at 27.540 kb on + strand at 27.812 kb on - strand, within GFF1380 at 27.984 kb on - strand, within GFF1380 at 27.984 kb on - strand, within GFF1380 at 28.062 kb on - strand, within GFF1380 at 28.075 kb on + strand, within GFF1380 at 28.076 kb on - strand, within GFF1380 at 28.076 kb on - strand, within GFF1380 at 28.076 kb on - strand, within GFF1380 at 28.084 kb on + strand, within GFF1380 at 28.233 kb on + strand, within GFF1380 at 28.360 kb on + strand, within GFF1380 at 28.459 kb on + strand at 28.459 kb on + strand at 28.460 kb on - strand at 28.595 kb on + strand, within GFF1381 at 28.596 kb on - strand, within GFF1381 at 28.864 kb on + strand, within GFF1381 at 28.865 kb on - strand, within GFF1381 at 28.879 kb on - strand, within GFF1381 at 28.980 kb on + strand, within GFF1381 at 28.981 kb on - strand, within GFF1381 at 28.981 kb on - strand, within GFF1381 at 29.126 kb on - strand, within GFF1381 at 29.241 kb on + strand, within GFF1381 at 29.381 kb on - strand, within GFF1381 at 29.384 kb on - strand, within GFF1381 at 29.413 kb on - strand at 29.413 kb on - strand at 29.427 kb on + strand at 29.441 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 26,943 - GFF1377 0.88 +0.6 27,143 - GFF1378 0.37 +0.2 27,201 + GFF1378 0.60 +0.2 27,210 + GFF1378 0.63 +0.7 27,224 + GFF1378 0.69 -0.2 27,226 - GFF1378 0.69 -0.3 27,388 - -0.1 27,399 - +0.4 27,536 + +0.2 27,540 + +0.0 27,540 + +0.6 27,812 - GFF1380 0.10 +0.3 27,984 - GFF1380 0.34 +0.5 27,984 - GFF1380 0.34 +0.7 28,062 - GFF1380 0.45 +0.9 28,075 + GFF1380 0.47 +0.4 28,076 - GFF1380 0.47 -0.0 28,076 - GFF1380 0.47 +0.1 28,076 - GFF1380 0.47 -0.3 28,084 + GFF1380 0.48 +0.6 28,233 + GFF1380 0.69 -0.0 28,360 + GFF1380 0.86 -0.8 28,459 + -0.3 28,459 + +0.4 28,460 - +0.1 28,595 + GFF1381 0.12 -0.1 28,596 - GFF1381 0.12 -0.1 28,864 + GFF1381 0.38 -0.2 28,865 - GFF1381 0.38 +0.0 28,879 - GFF1381 0.39 +0.0 28,980 + GFF1381 0.49 +0.1 28,981 - GFF1381 0.49 +0.2 28,981 - GFF1381 0.49 +0.0 29,126 - GFF1381 0.63 +0.5 29,241 + GFF1381 0.74 +2.0 29,381 - GFF1381 0.87 -0.5 29,384 - GFF1381 0.88 -0.8 29,413 - -0.2 29,413 - +0.3 29,427 + -0.2 29,441 - +0.6
Or see this region's nucleotide sequence