Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1262 and GFF1263 are separated by 144 nucleotides GFF1263 and GFF1264 overlap by 1 nucleotides GFF1264 and GFF1265 are separated by 55 nucleotides GFF1265 and GFF1266 are separated by 71 nucleotides
GFF1262 - FIG01047494: hypothetical protein, at 89,370 to 89,558
GFF1262
GFF1263 - Adenine-specific methyltransferase (EC 2.1.1.72), at 89,703 to 90,383
GFF1263
GFF1264 - putative cytoplasmic protein, at 90,383 to 90,604
GFF1264
GFF1265 - FIG01046678: hypothetical protein, at 90,660 to 91,073
GFF1265
GFF1266 - FIG00638373: hypothetical protein, at 91,145 to 91,909
GFF1266
Position (kb) 90
91 Strain fitness (log2 ratio) -1
0
1 at 89.438 kb on + strand, within GFF1262 at 89.503 kb on - strand, within GFF1262 at 89.702 kb on + strand at 89.702 kb on + strand at 89.703 kb on - strand at 89.738 kb on + strand at 89.738 kb on + strand at 89.739 kb on - strand at 89.791 kb on - strand, within GFF1263 at 89.825 kb on + strand, within GFF1263 at 89.884 kb on + strand, within GFF1263 at 89.916 kb on + strand, within GFF1263 at 89.989 kb on + strand, within GFF1263 at 89.990 kb on - strand, within GFF1263 at 90.004 kb on - strand, within GFF1263 at 90.114 kb on + strand, within GFF1263 at 90.115 kb on - strand, within GFF1263 at 90.267 kb on - strand, within GFF1263 at 90.563 kb on + strand, within GFF1264 at 90.564 kb on - strand, within GFF1264 at 90.666 kb on + strand at 90.666 kb on + strand at 90.666 kb on + strand at 90.666 kb on + strand at 90.667 kb on - strand at 90.758 kb on + strand, within GFF1265 at 90.758 kb on + strand, within GFF1265 at 90.997 kb on + strand, within GFF1265 at 90.997 kb on + strand, within GFF1265 at 90.997 kb on + strand, within GFF1265 at 90.997 kb on + strand, within GFF1265 at 90.998 kb on - strand, within GFF1265 at 90.998 kb on - strand, within GFF1265 at 91.105 kb on + strand at 91.162 kb on + strand at 91.171 kb on - strand at 91.186 kb on + strand at 91.331 kb on - strand, within GFF1266 at 91.331 kb on - strand, within GFF1266 at 91.562 kb on - strand, within GFF1266
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 89,438 + GFF1262 0.36 +0.4 89,503 - GFF1262 0.70 +0.4 89,702 + -0.1 89,702 + +0.4 89,703 - -0.4 89,738 + -0.1 89,738 + -1.1 89,739 - +0.0 89,791 - GFF1263 0.13 +0.5 89,825 + GFF1263 0.18 +0.2 89,884 + GFF1263 0.27 +0.0 89,916 + GFF1263 0.31 -0.1 89,989 + GFF1263 0.42 +0.7 89,990 - GFF1263 0.42 +0.0 90,004 - GFF1263 0.44 +0.2 90,114 + GFF1263 0.60 +0.0 90,115 - GFF1263 0.60 +0.1 90,267 - GFF1263 0.83 -1.6 90,563 + GFF1264 0.81 -1.2 90,564 - GFF1264 0.82 -0.8 90,666 + -0.0 90,666 + -1.2 90,666 + -0.1 90,666 + -0.2 90,667 - -0.1 90,758 + GFF1265 0.24 +0.1 90,758 + GFF1265 0.24 +0.4 90,997 + GFF1265 0.81 +0.7 90,997 + GFF1265 0.81 -0.7 90,997 + GFF1265 0.81 -0.8 90,997 + GFF1265 0.81 +0.2 90,998 - GFF1265 0.82 +1.1 90,998 - GFF1265 0.82 -0.3 91,105 + -0.1 91,162 + -0.1 91,171 - +0.6 91,186 + -0.1 91,331 - GFF1266 0.24 +0.1 91,331 - GFF1266 0.24 -0.6 91,562 - GFF1266 0.55 -1.1
Or see this region's nucleotide sequence