Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1250

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
78,911	+				+0.2
78,911	+				+0.2
78,912	-				+0.3
78,912	-				+0.2
78,912	-				+0.4
79,028	+		GFF1248	0.70	+0.1
79,080	-				+0.1
79,094	-				-0.4
79,141	+				+0.3
79,142	-				+0.3
79,142	-				+0.4
79,181	-		GFF1249	0.14	+0.2
79,269	-		GFF1249	0.43	+0.1
79,269	-		GFF1249	0.43	-0.0
79,323	-		GFF1249	0.60	+0.6
79,380	+		GFF1249	0.79	+0.6
79,381	-		GFF1249	0.80	-0.4
79,394	+		GFF1249	0.84	+0.0
79,394	+		GFF1249	0.84	-0.4
79,394	+		GFF1249	0.84	-1.1
79,436	-				+0.7
79,447	+				+0.0
79,519	+				+0.1
79,520	-				-0.1
79,540	+				-0.2
79,564	+				-0.5
79,653	+				+0.6
79,856	+				+0.4
79,862	+				+0.3
79,902	+				+0.2
79,903	-				-0.3
79,919	+				-1.3
79,958	+				+0.0
79,975	+				+0.0
79,979	+				-0.1
79,980	-				-0.0
80,307	+		GFF1250	0.38	+0.4
80,307	+		GFF1250	0.38	-0.1
80,308	-		GFF1250	0.38	+0.6
80,819	-		GFF1250	0.84	+0.4
81,048	+		GFF1251	0.12	+0.1
81,124	+		GFF1251	0.27	-0.7
81,125	-		GFF1251	0.27	+1.0
81,288	+		GFF1251	0.58	-0.1
81,289	-		GFF1251	0.58	-0.1
81,289	-		GFF1251	0.58	-0.1
81,395	+		GFF1251	0.79	+0.6
81,569	+		GFF1252	0.44	-0.1
81,569	+		GFF1252	0.44	+0.0
81,672	-				+0.5
81,697	-				-0.3
81,759	+		GFF1253	0.21	-1.4
81,794	+		GFF1253	0.32	-0.0
81,838	-		GFF1253	0.45	+0.0
81,843	+		GFF1253	0.46	+0.3
81,859	+		GFF1253	0.51	+0.6
81,886	-		GFF1253	0.59	+0.2
81,941	-		GFF1253	0.75	-0.1
81,941	-		GFF1253	0.75	-0.2
81,941	-		GFF1253	0.75	+0.3