Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1177

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1175 and GFF1176 are separated by 19 nucleotidesGFF1176 and GFF1177 are separated by 8 nucleotidesGFF1177 and GFF1178 overlap by 32 nucleotidesGFF1178 and GFF1179 are separated by 113 nucleotidesGFF1179 and GFF1180 overlap by 14 nucleotides GFF1175 - IncF plasmid conjugative transfer protein TraN, at 20,907 to 22,733 GFF1175 GFF1176 - IncF plasmid conjugative transfer protein TrbE, at 22,753 to 22,959 GFF1176 GFF1177 - IncF plasmid conjugative transfer pilus assembly protein TraF, at 22,968 to 23,720 GFF1177 GFF1178 - hypothetical protein, at 23,689 to 23,820 GFF1178 GFF1179 - IncF plasmid conjugative transfer protein TraQ, at 23,934 to 24,227 GFF1179 GFF1180 - IncF plasmid conjugative transfer protein TrbB, at 24,214 to 24,762 GFF1180 Position (kb) 22 23 24Strain fitness (log2 ratio) -1 0 1at 21.984 kb on + strand, within GFF1175at 21.984 kb on + strand, within GFF1175at 21.985 kb on - strand, within GFF1175at 22.062 kb on + strand, within GFF1175at 22.062 kb on + strand, within GFF1175at 22.072 kb on - strand, within GFF1175at 22.220 kb on + strand, within GFF1175at 22.470 kb on + strand, within GFF1175at 22.602 kb on - strandat 22.731 kb on + strandat 22.732 kb on - strandat 22.751 kb on + strandat 22.751 kb on + strandat 22.752 kb on - strandat 22.786 kb on - strand, within GFF1176at 22.786 kb on - strand, within GFF1176at 22.826 kb on + strand, within GFF1176at 22.870 kb on - strand, within GFF1176at 22.870 kb on - strand, within GFF1176at 22.879 kb on + strand, within GFF1176at 22.879 kb on + strand, within GFF1176at 22.880 kb on - strand, within GFF1176at 22.880 kb on - strand, within GFF1176at 22.944 kb on + strandat 22.967 kb on + strandat 22.967 kb on + strandat 22.968 kb on - strandat 22.968 kb on - strandat 23.005 kb on + strandat 23.055 kb on + strand, within GFF1177at 23.056 kb on - strand, within GFF1177at 23.097 kb on - strand, within GFF1177at 23.130 kb on - strand, within GFF1177at 23.130 kb on - strand, within GFF1177at 23.217 kb on + strand, within GFF1177at 23.307 kb on + strand, within GFF1177at 23.307 kb on + strand, within GFF1177at 23.308 kb on - strand, within GFF1177at 23.308 kb on - strand, within GFF1177at 23.319 kb on + strand, within GFF1177at 23.329 kb on - strand, within GFF1177at 23.341 kb on + strand, within GFF1177at 23.342 kb on - strand, within GFF1177at 23.406 kb on + strand, within GFF1177at 23.407 kb on - strand, within GFF1177at 23.412 kb on - strand, within GFF1177at 23.425 kb on - strand, within GFF1177at 23.468 kb on + strand, within GFF1177at 23.487 kb on + strand, within GFF1177at 23.487 kb on + strand, within GFF1177at 23.487 kb on + strand, within GFF1177at 23.612 kb on - strand, within GFF1177at 23.655 kb on - strandat 23.739 kb on + strand, within GFF1178at 23.739 kb on + strand, within GFF1178at 23.905 kb on - strandat 23.907 kb on - strandat 24.226 kb on - strandat 24.303 kb on + strand, within GFF1180at 24.489 kb on - strand, within GFF1180at 24.512 kb on - strand, within GFF1180at 24.534 kb on + strand, within GFF1180at 24.671 kb on + strand, within GFF1180at 24.672 kb on - strand, within GFF1180

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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21,984 + GFF1175 0.59 +0.7
21,984 + GFF1175 0.59 +0.6
21,985 - GFF1175 0.59 +0.3
22,062 + GFF1175 0.63 -0.2
22,062 + GFF1175 0.63 -0.2
22,072 - GFF1175 0.64 +0.3
22,220 + GFF1175 0.72 -0.1
22,470 + GFF1175 0.86 +0.2
22,602 - +0.8
22,731 + -0.6
22,732 - +0.2
22,751 + -0.3
22,751 + +0.3
22,752 - +0.5
22,786 - GFF1176 0.16 -0.0
22,786 - GFF1176 0.16 -0.4
22,826 + GFF1176 0.35 +0.1
22,870 - GFF1176 0.57 -0.1
22,870 - GFF1176 0.57 +0.2
22,879 + GFF1176 0.61 -0.2
22,879 + GFF1176 0.61 -0.1
22,880 - GFF1176 0.61 +0.1
22,880 - GFF1176 0.61 -0.4
22,944 + +0.1
22,967 + +0.2
22,967 + +0.4
22,968 - +0.3
22,968 - +0.2
23,005 + -0.0
23,055 + GFF1177 0.12 +0.2
23,056 - GFF1177 0.12 +0.4
23,097 - GFF1177 0.17 +0.1
23,130 - GFF1177 0.22 +0.0
23,130 - GFF1177 0.22 +0.1
23,217 + GFF1177 0.33 +0.1
23,307 + GFF1177 0.45 -0.0
23,307 + GFF1177 0.45 +0.4
23,308 - GFF1177 0.45 +0.4
23,308 - GFF1177 0.45 -0.1
23,319 + GFF1177 0.47 -0.0
23,329 - GFF1177 0.48 +0.1
23,341 + GFF1177 0.50 -0.2
23,342 - GFF1177 0.50 +0.2
23,406 + GFF1177 0.58 +1.1
23,407 - GFF1177 0.58 +0.3
23,412 - GFF1177 0.59 +0.1
23,425 - GFF1177 0.61 -0.0
23,468 + GFF1177 0.66 +0.2
23,487 + GFF1177 0.69 -0.1
23,487 + GFF1177 0.69 -0.1
23,487 + GFF1177 0.69 +0.9
23,612 - GFF1177 0.86 -0.0
23,655 - -0.4
23,739 + GFF1178 0.38 -0.7
23,739 + GFF1178 0.38 -0.6
23,905 - -0.3
23,907 - -0.0
24,226 - +0.2
24,303 + GFF1180 0.16 -0.1
24,489 - GFF1180 0.50 +0.1
24,512 - GFF1180 0.54 -0.0
24,534 + GFF1180 0.58 +0.4
24,671 + GFF1180 0.83 +0.1
24,672 - GFF1180 0.83 -0.1

Or see this region's nucleotide sequence