Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF111 and GFF112 overlap by 4 nucleotides GFF112 and GFF113 are separated by 234 nucleotides GFF113 and GFF114 are separated by 245 nucleotides
GFF111 - Candidate type III effector Hop protein, at 96,669 to 97,940
GFF111
GFF112 - 2-keto-3-deoxygluconate permease (KDG permease), at 97,937 to 98,890
GFF112
GFF113 - FIG01045153: hypothetical protein, at 99,125 to 99,487
GFF113
GFF114 - HNH endonuclease, at 99,733 to 100,575
GFF114
Position (kb) 97
98
99 Strain fitness (log2 ratio) -1
0
1 at 97.399 kb on + strand, within GFF111 at 97.407 kb on - strand, within GFF111 at 97.410 kb on + strand, within GFF111 at 97.411 kb on - strand, within GFF111 at 97.419 kb on + strand, within GFF111 at 97.456 kb on + strand, within GFF111 at 97.486 kb on - strand, within GFF111 at 97.673 kb on + strand, within GFF111 at 97.705 kb on + strand, within GFF111 at 97.930 kb on - strand at 98.335 kb on + strand, within GFF112 at 98.335 kb on + strand, within GFF112 at 98.335 kb on + strand, within GFF112 at 98.465 kb on - strand, within GFF112 at 98.477 kb on - strand, within GFF112 at 98.477 kb on - strand, within GFF112 at 98.530 kb on - strand, within GFF112 at 98.650 kb on + strand, within GFF112 at 98.651 kb on - strand, within GFF112 at 98.651 kb on - strand, within GFF112 at 98.777 kb on - strand, within GFF112 at 99.213 kb on + strand, within GFF113 at 99.300 kb on + strand, within GFF113 at 99.391 kb on + strand, within GFF113 at 99.533 kb on + strand at 99.534 kb on - strand at 99.540 kb on - strand at 99.544 kb on - strand at 99.553 kb on - strand at 99.553 kb on - strand at 99.553 kb on - strand at 99.693 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 97,399 + GFF111 0.57 +0.4 97,407 - GFF111 0.58 +0.8 97,410 + GFF111 0.58 +0.3 97,411 - GFF111 0.58 +0.2 97,419 + GFF111 0.59 +0.1 97,456 + GFF111 0.62 -1.0 97,486 - GFF111 0.64 +0.6 97,673 + GFF111 0.79 +0.5 97,705 + GFF111 0.81 +0.4 97,930 - +0.2 98,335 + GFF112 0.42 -0.3 98,335 + GFF112 0.42 +0.1 98,335 + GFF112 0.42 -1.3 98,465 - GFF112 0.55 -0.2 98,477 - GFF112 0.57 +0.0 98,477 - GFF112 0.57 +0.2 98,530 - GFF112 0.62 -0.3 98,650 + GFF112 0.75 -1.3 98,651 - GFF112 0.75 -0.7 98,651 - GFF112 0.75 -0.3 98,777 - GFF112 0.88 -0.3 99,213 + GFF113 0.24 +0.3 99,300 + GFF113 0.48 -0.1 99,391 + GFF113 0.73 -0.4 99,533 + -0.5 99,534 - -0.2 99,540 - -1.0 99,544 - -0.1 99,553 - +0.2 99,553 - -0.3 99,553 - +0.5 99,693 - +0.1
Or see this region's nucleotide sequence