Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF109 and GFF110 are separated by 9 nucleotides GFF110 and GFF111 overlap by 11 nucleotides GFF111 and GFF112 overlap by 4 nucleotides
GFF109 - DeoR family transcriptional regulator probably related to glycerate, glycolaldehyde metabolism, at 94,919 to 95,686
GFF109
GFF110 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 95,696 to 96,679
GFF110
GFF111 - Candidate type III effector Hop protein, at 96,669 to 97,940
GFF111
GFF112 - 2-keto-3-deoxygluconate permease (KDG permease), at 97,937 to 98,890
GFF112
Position (kb) 96
97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 95.896 kb on + strand, within GFF110 at 95.962 kb on + strand, within GFF110 at 96.104 kb on - strand, within GFF110 at 96.144 kb on - strand, within GFF110 at 96.144 kb on - strand, within GFF110 at 96.149 kb on - strand, within GFF110 at 96.215 kb on + strand, within GFF110 at 96.384 kb on - strand, within GFF110 at 96.683 kb on - strand at 96.683 kb on - strand at 96.697 kb on + strand at 96.720 kb on - strand at 97.399 kb on + strand, within GFF111 at 97.407 kb on - strand, within GFF111 at 97.410 kb on + strand, within GFF111 at 97.411 kb on - strand, within GFF111 at 97.419 kb on + strand, within GFF111 at 97.456 kb on + strand, within GFF111 at 97.486 kb on - strand, within GFF111 at 97.673 kb on + strand, within GFF111 at 97.705 kb on + strand, within GFF111 at 97.930 kb on - strand at 98.335 kb on + strand, within GFF112 at 98.335 kb on + strand, within GFF112 at 98.335 kb on + strand, within GFF112 at 98.465 kb on - strand, within GFF112 at 98.477 kb on - strand, within GFF112 at 98.477 kb on - strand, within GFF112 at 98.530 kb on - strand, within GFF112 at 98.650 kb on + strand, within GFF112 at 98.651 kb on - strand, within GFF112 at 98.651 kb on - strand, within GFF112 at 98.777 kb on - strand, within GFF112
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 95,896 + GFF110 0.20 -2.1 95,962 + GFF110 0.27 -0.0 96,104 - GFF110 0.41 -0.1 96,144 - GFF110 0.46 -0.9 96,144 - GFF110 0.46 -2.0 96,149 - GFF110 0.46 -1.2 96,215 + GFF110 0.53 -1.9 96,384 - GFF110 0.70 -1.3 96,683 - -2.3 96,683 - -2.9 96,697 + +0.2 96,720 - +0.3 97,399 + GFF111 0.57 +0.4 97,407 - GFF111 0.58 +0.8 97,410 + GFF111 0.58 +0.3 97,411 - GFF111 0.58 +0.2 97,419 + GFF111 0.59 +0.1 97,456 + GFF111 0.62 -1.0 97,486 - GFF111 0.64 +0.6 97,673 + GFF111 0.79 +0.5 97,705 + GFF111 0.81 +0.4 97,930 - +0.2 98,335 + GFF112 0.42 -0.3 98,335 + GFF112 0.42 +0.1 98,335 + GFF112 0.42 -1.3 98,465 - GFF112 0.55 -0.2 98,477 - GFF112 0.57 +0.0 98,477 - GFF112 0.57 +0.2 98,530 - GFF112 0.62 -0.3 98,650 + GFF112 0.75 -1.3 98,651 - GFF112 0.75 -0.7 98,651 - GFF112 0.75 -0.3 98,777 - GFF112 0.88 -0.3
Or see this region's nucleotide sequence