Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1101 and GFF1102 are separated by 0 nucleotides GFF1102 and GFF1103 are separated by 30 nucleotides GFF1103 and GFF1104 are separated by 15 nucleotides
GFF1101 - type 1 fimbriae anchoring protein FimD, at 286,587 to 289,208
GFF1101
GFF1102 - Fimbriae-like adhesin SfmH, at 289,209 to 290,216
GFF1102
GFF1103 - type 1 fimbrae adaptor subunit FimF, at 290,247 to 290,762
GFF1103
GFF1104 - type 1 fimbrae adaptor subunit FimF, at 290,778 to 291,296
GFF1104
Position (kb) 289
290
291 Strain fitness (log2 ratio) -1
0
1 at 288.312 kb on + strand, within GFF1101 at 288.432 kb on + strand, within GFF1101 at 288.452 kb on + strand, within GFF1101 at 288.467 kb on + strand, within GFF1101 at 288.661 kb on - strand, within GFF1101 at 288.792 kb on - strand, within GFF1101 at 289.392 kb on - strand, within GFF1102 at 289.392 kb on - strand, within GFF1102 at 289.392 kb on - strand, within GFF1102 at 289.441 kb on - strand, within GFF1102 at 289.450 kb on - strand, within GFF1102 at 289.450 kb on - strand, within GFF1102 at 289.450 kb on - strand, within GFF1102 at 289.450 kb on - strand, within GFF1102 at 289.494 kb on + strand, within GFF1102 at 289.515 kb on + strand, within GFF1102 at 289.706 kb on + strand, within GFF1102 at 289.707 kb on - strand, within GFF1102 at 289.712 kb on + strand, within GFF1102 at 289.712 kb on + strand, within GFF1102 at 289.719 kb on + strand, within GFF1102 at 289.761 kb on + strand, within GFF1102 at 289.775 kb on + strand, within GFF1102 at 290.094 kb on - strand, within GFF1102 at 290.148 kb on - strand at 290.322 kb on - strand, within GFF1103 at 290.344 kb on + strand, within GFF1103 at 290.344 kb on + strand, within GFF1103 at 290.618 kb on + strand, within GFF1103 at 290.679 kb on + strand, within GFF1103 at 290.773 kb on + strand at 290.789 kb on + strand at 291.060 kb on - strand, within GFF1104 at 291.071 kb on - strand, within GFF1104 at 291.071 kb on - strand, within GFF1104 at 291.134 kb on + strand, within GFF1104
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 288,312 + GFF1101 0.66 +0.9 288,432 + GFF1101 0.70 +1.0 288,452 + GFF1101 0.71 +0.3 288,467 + GFF1101 0.72 +0.7 288,661 - GFF1101 0.79 +0.2 288,792 - GFF1101 0.84 -0.1 289,392 - GFF1102 0.18 +0.4 289,392 - GFF1102 0.18 +0.0 289,392 - GFF1102 0.18 -0.7 289,441 - GFF1102 0.23 +0.0 289,450 - GFF1102 0.24 -0.3 289,450 - GFF1102 0.24 +0.3 289,450 - GFF1102 0.24 -0.2 289,450 - GFF1102 0.24 -0.2 289,494 + GFF1102 0.28 +0.0 289,515 + GFF1102 0.30 -0.5 289,706 + GFF1102 0.49 +0.4 289,707 - GFF1102 0.49 +0.1 289,712 + GFF1102 0.50 +0.9 289,712 + GFF1102 0.50 +0.0 289,719 + GFF1102 0.51 +0.1 289,761 + GFF1102 0.55 +0.4 289,775 + GFF1102 0.56 -0.2 290,094 - GFF1102 0.88 -0.1 290,148 - +0.6 290,322 - GFF1103 0.15 +0.4 290,344 + GFF1103 0.19 +0.2 290,344 + GFF1103 0.19 +1.0 290,618 + GFF1103 0.72 +0.2 290,679 + GFF1103 0.84 +0.0 290,773 + +0.6 290,789 + +0.9 291,060 - GFF1104 0.54 -1.1 291,071 - GFF1104 0.56 +0.3 291,071 - GFF1104 0.56 +0.0 291,134 + GFF1104 0.69 -0.8
Or see this region's nucleotide sequence